Analysis of interatomic Contacts of Structural Units in PDB entry:
7JUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JUJ entry

There are 6 chains in PDB entry 7JUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLY 215
B	ALA 1	GLY 215
C	ALA 1	GLY 215
D	ALA 1	GLY 215
E	ALA 1	GLY 215
F	ALA 1	GLY 215

There are 44 helices in PDB entry 7JUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	11	Right-handed 310
Helix 2	AA2	A	24	41	Right-handed alpha
Helix 3	AA3	A	49	57	Right-handed alpha
Helix 4	AA4	A	61	65	Right-handed 310
Helix 5	AA5	A	67	79	Right-handed alpha
Helix 6	AA6	A	121	133	Right-handed alpha
Helix 7	AA7	A	201	205	Right-handed 310
Helix 8	AA8	B	24	40	Right-handed alpha
Helix 9	AA9	B	49	57	Right-handed alpha
Helix 10	AB1	B	61	65	Right-handed 310
Helix 11	AB2	B	67	79	Right-handed alpha
Helix 12	AB3	B	121	133	Right-handed alpha
Helix 13	AB4	B	141	145	Right-handed 310
Helix 14	AB5	B	201	205	Right-handed 310
Helix 15	AB6	C	8	11	Right-handed 310
Helix 16	AB7	C	24	41	Right-handed alpha
Helix 17	AB8	C	50	57	Right-handed alpha
Helix 18	AB9	C	61	65	Right-handed 310
Helix 19	AC1	C	67	79	Right-handed alpha
Helix 20	AC2	C	121	133	Right-handed alpha
Helix 21	AC3	C	201	205	Right-handed 310
Helix 22	AC4	D	8	11	Right-handed 310
Helix 23	AC5	D	24	41	Right-handed alpha
Helix 24	AC6	D	49	57	Right-handed alpha
Helix 25	AC7	D	61	65	Right-handed 310
Helix 26	AC8	D	67	80	Right-handed alpha
Helix 27	AC9	D	121	133	Right-handed alpha
Helix 28	AD1	D	201	205	Right-handed 310
Helix 29	AD2	E	8	11	Right-handed 310
Helix 30	AD3	E	24	41	Right-handed alpha
Helix 31	AD4	E	49	57	Right-handed alpha
Helix 32	AD5	E	61	65	Right-handed 310
Helix 33	AD6	E	67	79	Right-handed alpha
Helix 34	AD7	E	92	96	Right-handed 310
Helix 35	AD8	E	121	133	Right-handed alpha
Helix 36	AD9	E	201	205	Right-handed 310
Helix 37	AE1	F	8	11	Right-handed 310
Helix 38	AE2	F	24	41	Right-handed alpha
Helix 39	AE3	F	49	57	Right-handed alpha
Helix 40	AE4	F	61	65	Right-handed 310
Helix 41	AE5	F	67	78	Right-handed alpha
Helix 42	AE6	F	121	133	Right-handed alpha
Helix 43	AE7	F	140	145	Right-handed 310
Helix 44	AE8	F	201	205	Right-handed 310

There are 17 sheets in PDB entry 7JUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	162	170	anti-parallel
Strand 3	A	135	139	anti-parallel
Strand 4	A	209	213	anti-parallel
Strand 5	A	114	117	anti-parallel
Strand 6	B	104	118	parallel
Strand 7	B	82	84	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	170	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	193	197	anti-parallel
Strand 4	A	151	152	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	162	170	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	193	197	anti-parallel
Strand 5	B	151	152	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	118	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	135	139	anti-parallel
Strand 4	B	162	170	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	E	114	117	parallel
Strand 4	E	209	213	anti-parallel
Strand 5	E	135	139	anti-parallel
Strand 6	E	162	170	anti-parallel
Strand 7	E	4	6	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	E	114	117	parallel
Strand 4	E	209	213	anti-parallel
Strand 5	E	135	139	anti-parallel
Strand 6	E	162	170	anti-parallel
Strand 7	E	177	181	anti-parallel
Strand 8	E	193	197	anti-parallel
Strand 9	E	151	152	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	162	170	anti-parallel
Strand 3	C	135	139	anti-parallel
Strand 4	C	209	213	anti-parallel
Strand 5	C	114	118	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	162	170	anti-parallel
Strand 3	C	177	181	anti-parallel
Strand 4	C	193	197	anti-parallel
Strand 5	C	151	152	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	108	111	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	162	170	anti-parallel
Strand 3	D	135	139	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	162	170	anti-parallel
Strand 3	D	177	181	anti-parallel
Strand 4	D	193	197	anti-parallel
Strand 5	D	151	152	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	108	117	anti-parallel
Strand 3	D	210	214	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	108	117	anti-parallel
Strand 3	E	104	111	parallel
Strand 4	E	82	84	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	162	170	anti-parallel
Strand 3	F	135	139	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	162	170	anti-parallel
Strand 3	F	177	181	anti-parallel
Strand 4	F	193	197	anti-parallel
Strand 5	F	151	152	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	84	first strand
Strand 2	F	108	111	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	117	first strand
Strand 2	F	210	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JUJ