Analysis of interatomic Contacts of Structural Units in PDB entry:
7JUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JUM entry

There are 6 chains in PDB entry 7JUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 557	ASN 732
B	ASP 558	GLY 731
C	ILE 560	GLY 731
H	GLN 1	ARG 251
I	GLN 1	ARG 251
J	GLN 1	ARG 251

There are 24 helices in PDB entry 7JUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	575	579	Right-handed 310
Helix 2	AA2	A	663	667	Right-handed alpha
Helix 3	AA3	A	682	685	Right-handed 310
Helix 4	AA4	B	575	579	Right-handed 310
Helix 5	AA5	B	663	667	Right-handed alpha
Helix 6	AA6	B	682	685	Right-handed 310
Helix 7	AA7	C	575	579	Right-handed 310
Helix 8	AA8	C	663	667	Right-handed alpha
Helix 9	AA9	C	682	685	Right-handed 310
Helix 10	AB1	H	52	56	Right-handed 310
Helix 11	AB2	H	62	65	Right-handed 310
Helix 12	AB3	H	74	76	Right-handed 310
Helix 13	AB4	H	87	91	Right-handed 310
Helix 14	AB5	H	222	226	Right-handed 310
Helix 15	AB6	I	52	56	Right-handed 310
Helix 16	AB7	I	62	65	Right-handed 310
Helix 17	AB8	I	74	76	Right-handed 310
Helix 18	AB9	I	87	91	Right-handed 310
Helix 19	AC1	I	222	226	Right-handed 310
Helix 20	AC2	J	52	56	Right-handed 310
Helix 21	AC3	J	62	65	Right-handed 310
Helix 22	AC4	J	74	76	Right-handed 310
Helix 23	AC5	J	87	91	Right-handed 310
Helix 24	AC6	J	222	226	Right-handed 310

There are 33 sheets in PDB entry 7JUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	608	615	parallel
Strand 3	A	720	727	parallel
Strand 4	A	700	707	anti-parallel
Strand 5	A	640	642	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	590	594	anti-parallel
Strand 3	A	621	625	parallel
Strand 4	A	687	691	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	654	first strand
Strand 2	A	657	662	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	676	first strand
Strand 2	A	679	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	716	717	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	583	first strand
Strand 2	B	608	615	parallel
Strand 3	B	720	727	parallel
Strand 4	B	700	707	anti-parallel
Strand 5	B	640	642	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	587	first strand
Strand 2	B	590	594	anti-parallel
Strand 3	B	621	625	parallel
Strand 4	B	687	691	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	654	first strand
Strand 2	B	657	662	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	676	first strand
Strand 2	B	679	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	716	717	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	583	first strand
Strand 2	C	608	615	parallel
Strand 3	C	720	727	parallel
Strand 4	C	700	707	anti-parallel
Strand 5	C	640	642	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	587	first strand
Strand 2	C	590	594	anti-parallel
Strand 3	C	621	625	parallel
Strand 4	C	687	691	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	649	654	first strand
Strand 2	C	657	662	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	675	676	first strand
Strand 2	C	679	680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	716	717	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	105	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	150	first strand
Strand 2	H	162	168	anti-parallel
Strand 3	H	213	218	anti-parallel
Strand 4	H	205	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	156	first strand
Strand 2	H	245	249	parallel
Strand 3	H	227	233	anti-parallel
Strand 4	H	176	181	anti-parallel
Strand 5	H	188	192	anti-parallel
Strand 6	H	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	156	first strand
Strand 2	H	245	249	parallel
Strand 3	H	227	233	anti-parallel
Strand 4	H	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	112	116	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	105	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	147	150	first strand
Strand 2	I	162	168	anti-parallel
Strand 3	I	213	218	anti-parallel
Strand 4	I	205	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	156	first strand
Strand 2	I	245	249	parallel
Strand 3	I	227	233	anti-parallel
Strand 4	I	176	181	anti-parallel
Strand 5	I	188	192	anti-parallel
Strand 6	I	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	156	first strand
Strand 2	I	245	249	parallel
Strand 3	I	227	233	anti-parallel
Strand 4	I	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	105	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	147	150	first strand
Strand 2	J	162	168	anti-parallel
Strand 3	J	213	218	anti-parallel
Strand 4	J	205	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	156	first strand
Strand 2	J	245	249	parallel
Strand 3	J	227	233	anti-parallel
Strand 4	J	176	181	anti-parallel
Strand 5	J	188	192	anti-parallel
Strand 6	J	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	156	first strand
Strand 2	J	245	249	parallel
Strand 3	J	227	233	anti-parallel
Strand 4	J	240	241	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JUM