Analysis of interatomic Contacts of Structural Units in PDB entry:
7JV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JV1 entry

There are 2 chains in PDB entry 7JV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 600PRO 881
C
 LEU 40LEU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7JV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
602 606Right-handed 310
Helix 2
AA2
D
649 662Right-handed alpha
Helix 3
AA3
D
694 699Right-handed alpha
Helix 4
AA4
D
706 727Right-handed alpha
Helix 5
AA5
D
735 737Right-handed 310
Helix 6
AA6
D
752 756Right-handed 310
Helix 7
AA7
D
772 777Right-handed alpha
Helix 8
AA8
D
780 787Right-handed alpha
Helix 9
AA9
D
792 796Right-handed 310
Helix 10
AB1
D
799 817Right-handed alpha
Helix 11
AB2
D
825 835Right-handed alpha
Helix 12
AB3
D
836 846Right-handed alpha
Helix 13
AB4
D
849 860Right-handed alpha
Helix 14
AB5
D
863 867Right-handed 310
Helix 15
AB6
D
869 879Right-handed alpha
Helix 16
AB7
C
43 58Right-handed alpha
Helix 17
AB8
C
64 66Right-handed 310
Helix 18
AB9
C
104 116Right-handed alpha
Helix 19
AC1
C
117 120Right-handed 310
Helix 20
AC2
C
151 159Right-handed alpha
Helix 21
AC3
C
162 185Right-handed alpha
Helix 22
AC4
C
192 194Right-handed 310
Helix 23
AC5
C
212 219Right-handed alpha
Helix 24
AC6
C
231 236Right-handed alpha
Helix 25
AC7
C
242 259Right-handed alpha
Helix 26
AC8
C
267 274Right-handed alpha
Helix 27
AC9
C
309 320Right-handed alpha
Helix 28
AD1
C
331 342Right-handed alpha
Helix 29
AD2
C
351 356Right-handed alpha
Helix 30
AD3
C
358 367Right-handed alpha
Helix 31
AD4
C
370 380Right-handed alpha
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There are 4 sheets in PDB entry 7JV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
614 621first strand
Strand 2
D
626 631anti-parallel
Strand 3
D
636 642anti-parallel
Strand 4
D
681 687anti-parallel
Strand 5
D
672 678anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
692 693first strand
Strand 2
D
739 742anti-parallel
Strand 3
D
745 748anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 75first strand
Strand 2
C
81 87anti-parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
129 135anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
196 198anti-parallel
Strand 3
C
204 206anti-parallel
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