Analysis of interatomic Contacts of Structural Units in PDB entry:
7JV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JV3 entry

There are 5 chains in PDB entry 7JV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	LEU 354
B	SER 0	LEU 354
C	SER 0	LEU 354
D	SER 0	LEU 354
E	MET 1	HIS 10

There are104 helices in PDB entry 7JV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	41	Right-handed alpha
Helix 2	AA2	A	55	64	Right-handed alpha
Helix 3	AA3	A	65	67	Right-handed 310
Helix 4	AA4	A	82	97	Right-handed alpha
Helix 5	AA5	A	110	117	Right-handed alpha
Helix 6	AA6	A	122	141	Right-handed alpha
Helix 7	AA7	A	178	189	Right-handed alpha
Helix 8	AA8	A	198	216	Right-handed alpha
Helix 9	AA9	A	233	245	Right-handed alpha
Helix 10	AB1	A	291	294	Right-handed 310
Helix 11	AB2	A	306	320	Right-handed alpha
Helix 12	AB3	A	331	343	Right-handed alpha
Helix 13	AB4	A	344	347	Right-handed 310
Helix 14	AB5	B	26	41	Right-handed alpha
Helix 15	AB6	B	55	64	Right-handed alpha
Helix 16	AB7	B	65	67	Right-handed 310
Helix 17	AB8	B	82	97	Right-handed alpha
Helix 18	AB9	B	110	117	Right-handed alpha
Helix 19	AC1	B	122	141	Right-handed alpha
Helix 20	AC2	B	178	189	Right-handed alpha
Helix 21	AC3	B	198	216	Right-handed alpha
Helix 22	AC4	B	233	245	Right-handed alpha
Helix 23	AC5	B	291	295	Right-handed 310
Helix 24	AC6	B	306	320	Right-handed alpha
Helix 25	AC7	B	331	343	Right-handed alpha
Helix 26	AC8	B	344	347	Right-handed 310
Helix 27	AC9	C	26	41	Right-handed alpha
Helix 28	AD1	C	55	64	Right-handed alpha
Helix 29	AD2	C	65	67	Right-handed 310
Helix 30	AD3	C	82	97	Right-handed alpha
Helix 31	AD4	C	110	117	Right-handed alpha
Helix 32	AD5	C	122	141	Right-handed alpha
Helix 33	AD6	C	178	189	Right-handed alpha
Helix 34	AD7	C	198	216	Right-handed alpha
Helix 35	AD8	C	233	245	Right-handed alpha
Helix 36	AD9	C	291	294	Right-handed 310
Helix 37	AE1	C	306	320	Right-handed alpha
Helix 38	AE2	C	331	343	Right-handed alpha
Helix 39	AE3	C	344	347	Right-handed 310
Helix 40	AE4	D	26	41	Right-handed alpha
Helix 41	AE5	D	55	64	Right-handed alpha
Helix 42	AE6	D	65	67	Right-handed 310
Helix 43	AE7	D	82	97	Right-handed alpha
Helix 44	AE8	D	110	117	Right-handed alpha
Helix 45	AE9	D	122	141	Right-handed alpha
Helix 46	AF1	D	178	189	Right-handed alpha
Helix 47	AF2	D	198	216	Right-handed alpha
Helix 48	AF3	D	233	245	Right-handed alpha
Helix 49	AF4	D	291	295	Right-handed 310
Helix 50	AF5	D	306	320	Right-handed alpha
Helix 51	AF6	D	331	343	Right-handed alpha
Helix 52	AF7	D	344	347	Right-handed 310
Helix 53	AF8	E	26	41	Right-handed alpha
Helix 54	AF9	E	55	64	Right-handed alpha
Helix 55	AG1	E	65	67	Right-handed 310
Helix 56	AG2	E	82	97	Right-handed alpha
Helix 57	AG3	E	110	117	Right-handed alpha
Helix 58	AG4	E	122	141	Right-handed alpha
Helix 59	AG5	E	178	189	Right-handed alpha
Helix 60	AG6	E	198	216	Right-handed alpha
Helix 61	AG7	E	233	245	Right-handed alpha
Helix 62	AG8	E	290	294	Right-handed 310
Helix 63	AG9	E	306	320	Right-handed alpha
Helix 64	AH1	E	331	343	Right-handed alpha
Helix 65	AH2	E	344	347	Right-handed 310
Helix 66	AH3	F	26	41	Right-handed alpha
Helix 67	AH4	F	55	64	Right-handed alpha
Helix 68	AH5	F	65	67	Right-handed 310
Helix 69	AH6	F	82	97	Right-handed alpha
Helix 70	AH7	F	110	117	Right-handed alpha
Helix 71	AH8	F	122	142	Right-handed alpha
Helix 72	AH9	F	178	189	Right-handed alpha
Helix 73	AI1	F	198	216	Right-handed alpha
Helix 74	AI2	F	233	245	Right-handed alpha
Helix 75	AI3	F	291	295	Right-handed 310
Helix 76	AI4	F	306	320	Right-handed alpha
Helix 77	AI5	F	331	343	Right-handed alpha
Helix 78	AI6	F	344	347	Right-handed 310
Helix 79	AI7	G	26	41	Right-handed alpha
Helix 80	AI8	G	55	64	Right-handed alpha
Helix 81	AI9	G	65	67	Right-handed 310
Helix 82	AJ1	G	82	97	Right-handed alpha
Helix 83	AJ2	G	110	117	Right-handed alpha
Helix 84	AJ3	G	122	141	Right-handed alpha
Helix 85	AJ4	G	178	189	Right-handed alpha
Helix 86	AJ5	G	198	216	Right-handed alpha
Helix 87	AJ6	G	233	245	Right-handed alpha
Helix 88	AJ7	G	291	295	Right-handed 310
Helix 89	AJ8	G	306	320	Right-handed alpha
Helix 90	AJ9	G	331	343	Right-handed alpha
Helix 91	AK1	G	344	347	Right-handed 310
Helix 92	AK2	H	26	41	Right-handed alpha
Helix 93	AK3	H	55	64	Right-handed alpha
Helix 94	AK4	H	65	67	Right-handed 310
Helix 95	AK5	H	82	97	Right-handed alpha
Helix 96	AK6	H	110	117	Right-handed alpha
Helix 97	AK7	H	122	141	Right-handed alpha
Helix 98	AK8	H	178	189	Right-handed alpha
Helix 99	AK9	H	198	216	Right-handed alpha
Helix 100	AL1	H	233	245	Right-handed alpha
Helix 101	AL2	H	291	295	Right-handed 310
Helix 102	AL3	H	306	320	Right-handed alpha
Helix 103	AL4	H	331	343	Right-handed alpha
Helix 104	AL5	H	344	347	Right-handed 310

There are 20 sheets in PDB entry 7JV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	288	289	anti-parallel
Strand 3	A	302	305	anti-parallel
Strand 4	A	221	230	parallel
Strand 5	A	322	328	parallel
Strand 6	A	2	6	parallel
Strand 7	A	44	46	parallel
Strand 8	A	71	76	parallel
Strand 9	A	101	105	parallel
Strand 10	A	172	175	parallel
Strand 11	A	191	195	parallel
Strand 12	A	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	22	23	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	288	289	anti-parallel
Strand 3	B	302	305	anti-parallel
Strand 4	B	221	230	parallel
Strand 5	B	322	328	parallel
Strand 6	B	2	6	parallel
Strand 7	B	44	47	parallel
Strand 8	B	71	76	parallel
Strand 9	B	101	105	parallel
Strand 10	B	172	175	parallel
Strand 11	B	191	195	parallel
Strand 12	B	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	22	23	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	288	289	anti-parallel
Strand 3	C	302	305	anti-parallel
Strand 4	C	221	230	parallel
Strand 5	C	322	328	parallel
Strand 6	C	2	6	parallel
Strand 7	C	44	46	parallel
Strand 8	C	71	76	parallel
Strand 9	C	101	105	parallel
Strand 10	C	172	175	parallel
Strand 11	C	191	194	parallel
Strand 12	C	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	22	23	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	288	289	anti-parallel
Strand 3	D	302	305	anti-parallel
Strand 4	D	221	230	parallel
Strand 5	D	322	328	parallel
Strand 6	D	2	6	parallel
Strand 7	D	44	46	parallel
Strand 8	D	71	76	parallel
Strand 9	D	101	105	parallel
Strand 10	D	172	175	parallel
Strand 11	D	191	195	parallel
Strand 12	D	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	289	first strand
Strand 2	E	302	305	anti-parallel
Strand 3	E	221	230	parallel
Strand 4	E	322	328	parallel
Strand 5	E	2	6	parallel
Strand 6	E	44	46	parallel
Strand 7	E	71	76	parallel
Strand 8	E	101	105	parallel
Strand 9	E	172	175	parallel
Strand 10	E	191	195	parallel
Strand 11	E	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	149	first strand
Strand 2	E	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	285	first strand
Strand 2	F	288	289	anti-parallel
Strand 3	F	302	305	anti-parallel
Strand 4	F	221	230	parallel
Strand 5	F	322	328	parallel
Strand 6	F	2	6	parallel
Strand 7	F	44	46	parallel
Strand 8	F	71	76	parallel
Strand 9	F	101	105	parallel
Strand 10	F	172	175	parallel
Strand 11	F	191	195	parallel
Strand 12	F	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	149	first strand
Strand 2	F	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	283	285	first strand
Strand 2	G	288	289	anti-parallel
Strand 3	G	302	305	anti-parallel
Strand 4	G	221	230	parallel
Strand 5	G	322	328	parallel
Strand 6	G	2	6	parallel
Strand 7	G	44	46	parallel
Strand 8	G	71	76	parallel
Strand 9	G	101	105	parallel
Strand 10	G	172	175	parallel
Strand 11	G	191	195	parallel
Strand 12	G	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	22	23	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	149	first strand
Strand 2	G	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	285	first strand
Strand 2	H	288	289	anti-parallel
Strand 3	H	302	305	anti-parallel
Strand 4	H	221	230	parallel
Strand 5	H	322	328	parallel
Strand 6	H	2	6	parallel
Strand 7	H	44	46	parallel
Strand 8	H	71	76	parallel
Strand 9	H	101	105	parallel
Strand 10	H	172	175	parallel
Strand 11	H	191	195	parallel
Strand 12	H	221	230	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	154	158	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JV3