Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JVI entry

There are 2 chains in PDB entry 7JVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26ASP 446
B
 ASN 26ASP 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7JVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 92Right-handed 310
Helix 2
AA2
A
133 139Right-handed alpha
Helix 3
AA3
A
211 215Right-handed 310
Helix 4
AA4
A
255 263Right-handed alpha
Helix 5
AA5
A
398 400Right-handed 310
Helix 6
AA6
A
438 442Right-handed 310
Helix 7
AA7
B
88 92Right-handed 310
Helix 8
AA8
B
133 139Right-handed alpha
Helix 9
AA9
B
211 215Right-handed 310
Helix 10
AB1
B
255 263Right-handed alpha
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There are 12 sheets in PDB entry 7JVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
54 58parallel
Strand 3
A
74 79parallel
Strand 4
A
103 108parallel
Strand 5
A
149 152parallel
Strand 6
A
172 174parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
62 65parallel
Strand 3
A
83 86parallel
Strand 4
A
119 122parallel
Strand 5
A
157 160parallel
Strand 6
A
179 183parallel
Strand 7
A
208 209parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
69 70parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
164 169parallel
Strand 3
A
191 196parallel
Strand 4
A
219 224parallel
Strand 5
A
243 245parallel
Strand 6
A
278 280parallel
Strand 7
A
296 298parallel
Strand 8
A
325 327parallel
Strand 9
A
345 354parallel
Strand 10
A
311 314parallel
Strand 11
A
291 292parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
164 169parallel
Strand 3
A
191 196parallel
Strand 4
A
219 224parallel
Strand 5
A
243 245parallel
Strand 6
A
278 280parallel
Strand 7
A
296 298parallel
Strand 8
A
325 327parallel
Strand 9
A
345 354parallel
Strand 10
A
385 396parallel
Strand 11
A
424 433anti-parallel
Strand 12
A
413 421anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
229 232parallel
Strand 3
A
249 252parallel
Strand 4
A
285 288parallel
Strand 5
A
301 304parallel
Strand 6
A
332 337parallel
Strand 7
A
369 374parallel
Strand 8
A
405 407parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
54 58parallel
Strand 3
B
74 79parallel
Strand 4
B
103 108parallel
Strand 5
B
149 152parallel
Strand 6
B
172 174parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
62 65parallel
Strand 3
B
83 86parallel
Strand 4
B
119 122parallel
Strand 5
B
157 160parallel
Strand 6
B
179 183parallel
Strand 7
B
208 209parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
69 70parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
164 169parallel
Strand 3
B
191 196parallel
Strand 4
B
219 224parallel
Strand 5
B
243 245parallel
Strand 6
B
278 280parallel
Strand 7
B
296 298parallel
Strand 8
B
325 327parallel
Strand 9
B
351 354parallel
Strand 10
B
393 396parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
229 232parallel
Strand 3
B
249 252parallel
Strand 4
B
285 288parallel
Strand 5
B
301 304parallel
Strand 6
B
332 337parallel
Strand 7
B
369 374parallel
Strand 8
B
405 407parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
311 314parallel
Strand 3
B
345 348parallel
Strand 4
B
385 391parallel
Strand 5
B
424 433anti-parallel
Strand 6
B
413 421anti-parallel
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