Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JVL entry

There are 3 chains in PDB entry 7JVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 30	ARG 489
B	ARG 30	GLU 488
C	LEU 31	MET 440

There are 80 helices in PDB entry 7JVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	63	Right-handed alpha
Helix 2	AA2	A	91	95	Right-handed 310
Helix 3	AA3	A	104	108	Right-handed 310
Helix 4	AA4	A	120	128	Right-handed alpha
Helix 5	AA5	A	130	136	Right-handed alpha
Helix 6	AA6	A	143	157	Right-handed alpha
Helix 7	AA7	A	231	240	Right-handed alpha
Helix 8	AA8	A	255	269	Right-handed alpha
Helix 9	AA9	A	291	298	Right-handed 310
Helix 10	AB1	A	299	306	Right-handed alpha
Helix 11	AB2	A	308	319	Right-handed alpha
Helix 12	AB3	A	320	323	Right-handed 310
Helix 13	AB4	A	328	346	Right-handed alpha
Helix 14	AB5	A	348	352	Right-handed 310
Helix 15	AB6	A	410	416	Right-handed alpha
Helix 16	AB7	A	417	423	Right-handed 310
Helix 17	AB8	A	457	462	Right-handed alpha
Helix 18	AB9	A	463	467	Right-handed 310
Helix 19	AC1	A	470	489	Right-handed alpha
Helix 20	AC2	B	48	62	Right-handed alpha
Helix 21	AC3	B	91	95	Right-handed 310
Helix 22	AC4	B	104	108	Right-handed 310
Helix 23	AC5	B	120	128	Right-handed alpha
Helix 24	AC6	B	130	138	Right-handed alpha
Helix 25	AC7	B	143	157	Right-handed alpha
Helix 26	AC8	B	158	160	Right-handed 310
Helix 27	AC9	B	231	240	Right-handed alpha
Helix 28	AD1	B	255	269	Right-handed alpha
Helix 29	AD2	B	291	298	Right-handed 310
Helix 30	AD3	B	299	306	Right-handed alpha
Helix 31	AD4	B	308	319	Right-handed alpha
Helix 32	AD5	B	320	323	Right-handed 310
Helix 33	AD6	B	328	346	Right-handed alpha
Helix 34	AD7	B	348	352	Right-handed 310
Helix 35	AD8	B	410	416	Right-handed alpha
Helix 36	AD9	B	417	423	Right-handed 310
Helix 37	AE1	B	457	462	Right-handed alpha
Helix 38	AE2	B	463	467	Right-handed 310
Helix 39	AE3	B	470	488	Right-handed alpha
Helix 40	AE4	C	48	63	Right-handed alpha
Helix 41	AE5	C	91	95	Right-handed 310
Helix 42	AE6	C	104	108	Right-handed 310
Helix 43	AE7	C	120	128	Right-handed alpha
Helix 44	AE8	C	130	138	Right-handed alpha
Helix 45	AE9	C	143	157	Right-handed alpha
Helix 46	AF1	C	158	160	Right-handed 310
Helix 47	AF2	C	231	240	Right-handed alpha
Helix 48	AF3	C	255	269	Right-handed alpha
Helix 49	AF4	C	291	298	Right-handed 310
Helix 50	AF5	C	299	306	Right-handed alpha
Helix 51	AF6	C	308	319	Right-handed alpha
Helix 52	AF7	C	320	323	Right-handed 310
Helix 53	AF8	C	328	346	Right-handed alpha
Helix 54	AF9	C	348	352	Right-handed 310
Helix 55	AG1	C	410	416	Right-handed alpha
Helix 56	AG2	C	417	423	Right-handed 310
Helix 57	AG3	C	457	462	Right-handed alpha
Helix 58	AG4	C	463	467	Right-handed 310
Helix 59	AG5	C	470	488	Right-handed alpha
Helix 60	AG6	D	48	63	Right-handed alpha
Helix 61	AG7	D	91	95	Right-handed 310
Helix 62	AG8	D	104	108	Right-handed 310
Helix 63	AG9	D	120	129	Right-handed alpha
Helix 64	AH1	D	130	136	Right-handed alpha
Helix 65	AH2	D	143	157	Right-handed alpha
Helix 66	AH3	D	158	160	Right-handed 310
Helix 67	AH4	D	231	240	Right-handed alpha
Helix 68	AH5	D	255	269	Right-handed alpha
Helix 69	AH6	D	289	294	Right-handed alpha
Helix 70	AH7	D	295	298	Right-handed 310
Helix 71	AH8	D	299	306	Right-handed alpha
Helix 72	AH9	D	308	319	Right-handed alpha
Helix 73	AI1	D	320	323	Right-handed 310
Helix 74	AI2	D	328	346	Right-handed alpha
Helix 75	AI3	D	348	352	Right-handed 310
Helix 76	AI4	D	411	416	Right-handed alpha
Helix 77	AI5	D	417	423	Right-handed 310
Helix 78	AI6	D	457	462	Right-handed alpha
Helix 79	AI7	D	463	467	Right-handed 310
Helix 80	AI8	D	470	484	Right-handed alpha

There are 20 sheets in PDB entry 7JVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	79	82	parallel
Strand 3	A	39	45	parallel
Strand 4	A	198	208	parallel
Strand 5	A	185	192	anti-parallel
Strand 6	A	166	174	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	79	82	parallel
Strand 3	A	39	45	parallel
Strand 4	A	198	208	parallel
Strand 5	A	450	453	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	407	408	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	400	403	parallel
Strand 3	A	248	252	parallel
Strand 4	A	273	277	parallel
Strand 5	A	354	357	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	366	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	394	398	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	79	82	parallel
Strand 3	B	40	45	parallel
Strand 4	B	198	208	parallel
Strand 5	B	185	192	anti-parallel
Strand 6	B	166	174	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	79	82	parallel
Strand 3	B	40	45	parallel
Strand 4	B	198	208	parallel
Strand 5	B	450	453	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	407	408	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	400	403	parallel
Strand 3	B	248	252	parallel
Strand 4	B	273	277	parallel
Strand 5	B	355	357	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	366	first strand
Strand 2	B	374	380	anti-parallel
Strand 3	B	394	398	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	79	82	parallel
Strand 3	C	40	45	parallel
Strand 4	C	198	208	parallel
Strand 5	C	185	192	anti-parallel
Strand 6	C	166	174	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	79	82	parallel
Strand 3	C	40	45	parallel
Strand 4	C	198	208	parallel
Strand 5	C	450	453	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	407	408	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	228	first strand
Strand 2	C	400	403	parallel
Strand 3	C	248	252	parallel
Strand 4	C	273	277	parallel
Strand 5	C	355	357	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	366	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	394	398	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	79	82	parallel
Strand 3	D	40	45	parallel
Strand 4	D	198	208	parallel
Strand 5	D	185	192	anti-parallel
Strand 6	D	166	174	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	79	82	parallel
Strand 3	D	40	45	parallel
Strand 4	D	198	208	parallel
Strand 5	D	450	453	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	407	408	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	400	403	parallel
Strand 3	D	248	252	parallel
Strand 4	D	273	277	parallel
Strand 5	D	355	357	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	366	first strand
Strand 2	D	374	380	anti-parallel
Strand 3	D	395	398	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVL