Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JVM entry

There are 2 chains in PDB entry 7JVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LEU 525
B	ARG 4	LEU 525

There are 29 helices in PDB entry 7JVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	73	82	Right-handed alpha
Helix 3	AA3	A	118	130	Right-handed alpha
Helix 4	AA4	A	189	200	Right-handed alpha
Helix 5	AA5	A	225	235	Right-handed alpha
Helix 6	AA6	A	246	257	Right-handed alpha
Helix 7	AA7	A	258	262	Right-handed 310
Helix 8	AA8	A	265	270	Right-handed alpha
Helix 9	AA9	A	271	277	Right-handed 310
Helix 10	AB1	A	337	348	Right-handed alpha
Helix 11	AB2	A	432	449	Right-handed alpha
Helix 12	AB3	A	463	482	Right-handed alpha
Helix 13	AB4	A	489	499	Right-handed alpha
Helix 14	AB5	A	507	524	Right-handed alpha
Helix 15	AB6	B	12	24	Right-handed alpha
Helix 16	AB7	B	73	84	Right-handed alpha
Helix 17	AB8	B	118	129	Right-handed alpha
Helix 18	AB9	B	189	200	Right-handed alpha
Helix 19	AC1	B	225	235	Right-handed alpha
Helix 20	AC2	B	246	257	Right-handed alpha
Helix 21	AC3	B	258	262	Right-handed 310
Helix 22	AC4	B	265	270	Right-handed alpha
Helix 23	AC5	B	271	277	Right-handed 310
Helix 24	AC6	B	334	336	Right-handed 310
Helix 25	AC7	B	337	348	Right-handed alpha
Helix 26	AC8	B	432	449	Right-handed alpha
Helix 27	AC9	B	463	483	Right-handed alpha
Helix 28	AD1	B	489	499	Right-handed alpha
Helix 29	AD2	B	507	524	Right-handed alpha

There are 13 sheets in PDB entry 7JVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	63	65	anti-parallel
Strand 3	A	50	57	anti-parallel
Strand 4	A	41	47	anti-parallel
Strand 5	A	28	33	anti-parallel
Strand 6	A	100	101	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	134	139	parallel
Strand 3	A	147	153	anti-parallel
Strand 4	A	166	174	anti-parallel
Strand 5	A	179	180	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	134	139	parallel
Strand 3	A	214	215	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	209	210	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	487	488	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	327	330	anti-parallel
Strand 3	A	455	458	parallel
Strand 4	A	352	355	parallel
Strand 5	A	408	420	parallel
Strand 6	A	396	405	anti-parallel
Strand 7	A	383	392	anti-parallel
Strand 8	A	377	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	364	365	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	63	65	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	41	47	anti-parallel
Strand 5	B	28	33	anti-parallel
Strand 6	B	100	101	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	167	175	anti-parallel
Strand 3	B	147	152	anti-parallel
Strand 4	B	134	139	anti-parallel
Strand 5	B	214	215	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	209	210	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	487	488	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	291	first strand
Strand 2	B	304	310	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	455	458	parallel
Strand 5	B	352	355	parallel
Strand 6	B	408	420	parallel
Strand 7	B	396	405	anti-parallel
Strand 8	B	383	392	anti-parallel
Strand 9	B	377	380	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	364	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVM