Analysis of interatomic Contacts of Structural Units in PDB entry:
7JVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JVT entry

There are 4 chains in PDB entry 7JVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 4ASN 201
D
 LYS 3ASN 201
E
 A 2 T 20
F
 A 22 T 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7JVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
8 30Right-handed alpha
Helix 2
AA2
C
32 40Right-handed alpha
Helix 3
AA3
C
43 52Right-handed alpha
Helix 4
AA4
C
58 69Right-handed alpha
Helix 5
AA5
C
72 77Right-handed alpha
Helix 6
AA6
C
77 89Right-handed alpha
Helix 7
AA7
C
118 120Right-handed 310
Helix 8
AA8
C
185 187Right-handed 310
Helix 9
AA9
D
9 24Right-handed alpha
Helix 10
AB1
D
25 30Right-handed alpha
Helix 11
AB2
D
32 41Right-handed alpha
Helix 12
AB3
D
43 52Right-handed alpha
Helix 13
AB4
D
58 70Right-handed alpha
Helix 14
AB5
D
72 76Right-handed 310
Helix 15
AB6
D
77 89Right-handed alpha
Helix 16
AB7
D
118 120Right-handed 310
Helix 17
AB8
D
185 187Right-handed 310
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There are 2 sheets in PDB entry 7JVT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 183first strand
Strand 2
C
170 174anti-parallel
Strand 3
C
157 166anti-parallel
Strand 4
C
148 154anti-parallel
Strand 5
C
188 199anti-parallel
Strand 6
C
135 140anti-parallel
Strand 7
C
127 132anti-parallel
Strand 8
C
94 103parallel
Strand 9
C
106 116anti-parallel
Strand 10
D
106 116anti-parallel
Strand 11
D
94 103anti-parallel
Strand 12
D
127 132parallel
Strand 13
D
135 140anti-parallel
Strand 14
D
188 199anti-parallel
Strand 15
D
148 153anti-parallel
Strand 16
D
158 166anti-parallel
Strand 17
D
170 174anti-parallel
Strand 18
D
180 183anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 183first strand
Strand 2
C
170 174anti-parallel
Strand 3
C
157 166anti-parallel
Strand 4
C
148 154anti-parallel
Strand 5
C
188 199anti-parallel
Strand 6
D
188 199anti-parallel
Strand 7
D
148 153anti-parallel
Strand 8
D
158 166anti-parallel
Strand 9
D
170 174anti-parallel
Strand 10
D
180 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il