Analysis of interatomic Contacts of Structural Units in PDB entry:
7JW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JW1 entry

There are 10 chains in PDB entry 7JW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 37	VAL 342
B	MET 1	SER 346
C	VAL 37	PHE 345
D	MET 1	SER 346
E	PRO 7	GLY 241
a	VAL 37	VAL 342
b	MET 1	SER 346
c	VAL 37	PHE 345
d	MET 1	SER 346
e	PRO 7	GLY 241

There are 78 helices in PDB entry 7JW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	49	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed alpha
Helix 3	AA3	A	114	123	Right-handed alpha
Helix 4	AA4	A	125	148	Right-handed alpha
Helix 5	AA5	A	170	179	Right-handed alpha
Helix 6	AA6	A	209	222	Right-handed alpha
Helix 7	AA7	A	223	228	Right-handed alpha
Helix 8	AA8	A	301	303	Right-handed 310
Helix 9	AA9	A	311	313	Right-handed 310
Helix 10	AB1	B	2	14	Right-handed alpha
Helix 11	AB2	B	36	49	Right-handed alpha
Helix 12	AB3	B	114	123	Right-handed alpha
Helix 13	AB4	B	126	148	Right-handed alpha
Helix 14	AB5	B	170	179	Right-handed alpha
Helix 15	AB6	B	209	221	Right-handed alpha
Helix 16	AB7	B	223	228	Right-handed alpha
Helix 17	AB8	B	238	250	Right-handed alpha
Helix 18	AB9	B	263	268	Right-handed alpha
Helix 19	AC1	C	38	49	Right-handed alpha
Helix 20	AC2	C	49	55	Right-handed alpha
Helix 21	AC3	C	114	121	Right-handed alpha
Helix 22	AC4	C	125	147	Right-handed alpha
Helix 23	AC5	C	170	178	Right-handed alpha
Helix 24	AC6	C	209	221	Right-handed alpha
Helix 25	AC7	C	223	227	Right-handed 310
Helix 26	AC8	D	2	13	Right-handed alpha
Helix 27	AC9	D	36	49	Right-handed alpha
Helix 28	AD1	D	50	55	Right-handed alpha
Helix 29	AD2	D	114	123	Right-handed alpha
Helix 30	AD3	D	125	147	Right-handed alpha
Helix 31	AD4	D	170	178	Right-handed alpha
Helix 32	AD5	D	210	221	Right-handed alpha
Helix 33	AD6	D	223	228	Right-handed alpha
Helix 34	AD7	E	10	12	Right-handed 310
Helix 35	AD8	E	13	66	Right-handed alpha
Helix 36	AD9	E	75	138	Right-handed alpha
Helix 37	AE1	E	141	155	Right-handed alpha
Helix 38	AE2	E	156	160	Right-handed 310
Helix 39	AE3	E	169	189	Right-handed alpha
Helix 40	AE4	E	195	200	Right-handed alpha
Helix 41	AE5	E	219	238	Right-handed alpha
Helix 42	AE6	a	38	49	Right-handed alpha
Helix 43	AE7	a	49	54	Right-handed alpha
Helix 44	AE8	a	113	121	Right-handed alpha
Helix 45	AE9	a	125	148	Right-handed alpha
Helix 46	AF1	a	170	179	Right-handed alpha
Helix 47	AF2	a	209	222	Right-handed alpha
Helix 48	AF3	a	223	227	Right-handed 310
Helix 49	AF4	a	301	303	Right-handed 310
Helix 50	AF5	b	2	14	Right-handed alpha
Helix 51	AF6	b	37	47	Right-handed alpha
Helix 52	AF7	b	114	121	Right-handed alpha
Helix 53	AF8	b	126	148	Right-handed alpha
Helix 54	AF9	b	170	179	Right-handed alpha
Helix 55	AG1	b	209	221	Right-handed alpha
Helix 56	AG2	b	223	228	Right-handed alpha
Helix 57	AG3	b	238	250	Right-handed alpha
Helix 58	AG4	b	263	268	Right-handed alpha
Helix 59	AG5	c	38	49	Right-handed alpha
Helix 60	AG6	c	114	118	Right-handed alpha
Helix 61	AG7	c	118	123	Right-handed alpha
Helix 62	AG8	c	125	147	Right-handed alpha
Helix 63	AG9	c	170	178	Right-handed alpha
Helix 64	AH1	c	209	221	Right-handed alpha
Helix 65	AH2	d	4	13	Right-handed alpha
Helix 66	AH3	d	36	49	Right-handed alpha
Helix 67	AH4	d	50	55	Right-handed alpha
Helix 68	AH5	d	114	123	Right-handed alpha
Helix 69	AH6	d	125	147	Right-handed alpha
Helix 70	AH7	d	170	178	Right-handed alpha
Helix 71	AH8	d	210	221	Right-handed alpha
Helix 72	AH9	d	223	228	Right-handed alpha
Helix 73	AI1	e	14	66	Right-handed alpha
Helix 74	AI2	e	75	138	Right-handed alpha
Helix 75	AI3	e	141	155	Right-handed alpha
Helix 76	AI4	e	169	189	Right-handed alpha
Helix 77	AI5	e	195	201	Right-handed alpha
Helix 78	AI6	e	219	238	Right-handed alpha

There are 34 sheets in PDB entry 7JW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	294	299	parallel
Strand 3	A	315	328	anti-parallel
Strand 4	A	104	113	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	294	299	parallel
Strand 3	A	315	328	anti-parallel
Strand 4	A	304	310	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	101	102	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	335	338	parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	232	236	anti-parallel
Strand 5	A	275	277	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	A	340	341	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	294	299	parallel
Strand 3	B	315	328	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	294	299	parallel
Strand 3	B	315	328	anti-parallel
Strand 4	B	104	113	anti-parallel
Strand 5	C	77	78	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	101	102	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	d	104	113	parallel
Strand 3	d	315	328	anti-parallel
Strand 4	d	294	310	anti-parallel
Strand 5	d	56	60	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	335	338	parallel
Strand 3	B	285	289	anti-parallel
Strand 4	B	233	236	anti-parallel
Strand 5	B	273	277	parallel
Strand 6	B	269	270	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	340	343	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	294	299	parallel
Strand 3	C	315	328	anti-parallel
Strand 4	C	104	113	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	294	299	parallel
Strand 3	C	315	328	anti-parallel
Strand 4	C	304	308	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	101	102	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	334	338	parallel
Strand 3	C	285	290	anti-parallel
Strand 4	C	232	236	anti-parallel
Strand 5	C	275	277	parallel
Strand 6	C	264	265	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	C	340	341	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	294	310	parallel
Strand 3	D	315	328	anti-parallel
Strand 4	D	104	113	anti-parallel
Strand 5	b	77	78	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	294	310	parallel
Strand 3	D	315	328	anti-parallel
Strand 4	D	104	113	anti-parallel
Strand 5	b	91	92	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	184	first strand
Strand 2	D	334	337	parallel
Strand 3	D	286	289	anti-parallel
Strand 4	D	233	235	anti-parallel
Strand 5	D	275	277	parallel
Strand 6	D	264	266	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	342	343	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	57	60	first strand
Strand 2	a	294	299	parallel
Strand 3	a	315	328	anti-parallel
Strand 4	a	104	112	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	57	60	first strand
Strand 2	a	294	299	parallel
Strand 3	a	315	328	anti-parallel
Strand 4	a	304	310	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	64	65	first strand
Strand 2	a	101	102	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	183	184	first strand
Strand 2	a	335	338	parallel
Strand 3	a	285	290	anti-parallel
Strand 4	a	232	236	anti-parallel
Strand 5	a	276	277	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	199	200	first strand
Strand 2	a	340	341	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	56	60	first strand
Strand 2	b	294	299	parallel
Strand 3	b	315	328	anti-parallel
Strand 4	b	104	108	anti-parallel
Strand 5	c	77	78	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	304	308	first strand
Strand 2	b	315	328	anti-parallel
Strand 3	b	110	113	anti-parallel
Strand 4	c	91	92	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	64	65	first strand
Strand 2	b	101	102	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	183	184	first strand
Strand 2	b	335	338	parallel
Strand 3	b	285	289	anti-parallel
Strand 4	b	233	236	anti-parallel
Strand 5	b	275	277	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	199	202	first strand
Strand 2	b	340	343	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	56	60	first strand
Strand 2	c	294	299	parallel
Strand 3	c	315	328	anti-parallel
Strand 4	c	304	308	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	112	113	first strand
Strand 2	c	315	328	anti-parallel
Strand 3	c	104	109	anti-parallel
Strand 4	d	77	78	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	264	265	first strand
Strand 2	c	275	277	anti-parallel
Strand 3	c	232	236	parallel
Strand 4	c	285	290	anti-parallel
Strand 5	c	334	338	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	183	184	first strand
Strand 2	d	334	337	parallel
Strand 3	d	286	289	anti-parallel
Strand 4	d	233	235	anti-parallel
Strand 5	d	275	277	parallel
Strand 6	d	264	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JW1