Analysis of interatomic Contacts of Structural Units in PDB entry:
7JW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JW9 entry

There are 4 chains in PDB entry 7JW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ALA 377
B	SER 0	ALA 377
C	SER 0	ALA 377
D	SER 0	ALA 377

There are 62 helices in PDB entry 7JW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	41	Right-handed alpha
Helix 2	AA2	A	55	64	Right-handed alpha
Helix 3	AA3	A	65	67	Right-handed 310
Helix 4	AA4	A	82	97	Right-handed alpha
Helix 5	AA5	A	110	117	Right-handed alpha
Helix 6	AA6	A	122	141	Right-handed alpha
Helix 7	AA7	A	178	188	Right-handed alpha
Helix 8	AA8	A	198	216	Right-handed alpha
Helix 9	AA9	A	233	245	Right-handed alpha
Helix 10	AB1	A	249	263	Right-handed alpha
Helix 11	AB2	A	265	276	Right-handed alpha
Helix 12	AB3	A	291	295	Right-handed 310
Helix 13	AB4	A	306	319	Right-handed alpha
Helix 14	AB5	A	331	343	Right-handed alpha
Helix 15	AB6	A	344	347	Right-handed 310
Helix 16	AB7	A	350	355	Right-handed alpha
Helix 17	AB8	B	26	41	Right-handed alpha
Helix 18	AB9	B	55	64	Right-handed alpha
Helix 19	AC1	B	65	67	Right-handed 310
Helix 20	AC2	B	82	97	Right-handed alpha
Helix 21	AC3	B	110	117	Right-handed alpha
Helix 22	AC4	B	122	141	Right-handed alpha
Helix 23	AC5	B	178	189	Right-handed alpha
Helix 24	AC6	B	198	216	Right-handed alpha
Helix 25	AC7	B	233	246	Right-handed alpha
Helix 26	AC8	B	249	263	Right-handed alpha
Helix 27	AC9	B	265	273	Right-handed alpha
Helix 28	AD1	B	291	295	Right-handed 310
Helix 29	AD2	B	306	320	Right-handed alpha
Helix 30	AD3	B	331	343	Right-handed alpha
Helix 31	AD4	B	344	347	Right-handed 310
Helix 32	AD5	C	26	41	Right-handed alpha
Helix 33	AD6	C	55	64	Right-handed alpha
Helix 34	AD7	C	65	67	Right-handed 310
Helix 35	AD8	C	82	97	Right-handed alpha
Helix 36	AD9	C	110	117	Right-handed alpha
Helix 37	AE1	C	122	142	Right-handed alpha
Helix 38	AE2	C	178	189	Right-handed alpha
Helix 39	AE3	C	198	216	Right-handed alpha
Helix 40	AE4	C	233	245	Right-handed alpha
Helix 41	AE5	C	249	263	Right-handed alpha
Helix 42	AE6	C	265	276	Right-handed alpha
Helix 43	AE7	C	291	295	Right-handed 310
Helix 44	AE8	C	306	320	Right-handed alpha
Helix 45	AE9	C	331	343	Right-handed alpha
Helix 46	AF1	C	344	347	Right-handed 310
Helix 47	AF2	D	26	41	Right-handed alpha
Helix 48	AF3	D	55	64	Right-handed alpha
Helix 49	AF4	D	65	67	Right-handed 310
Helix 50	AF5	D	82	97	Right-handed alpha
Helix 51	AF6	D	110	117	Right-handed alpha
Helix 52	AF7	D	122	142	Right-handed alpha
Helix 53	AF8	D	178	188	Right-handed alpha
Helix 54	AF9	D	198	216	Right-handed alpha
Helix 55	AG1	D	233	245	Right-handed alpha
Helix 56	AG2	D	249	263	Right-handed alpha
Helix 57	AG3	D	265	273	Right-handed alpha
Helix 58	AG4	D	291	295	Right-handed 310
Helix 59	AG5	D	306	320	Right-handed alpha
Helix 60	AG6	D	331	343	Right-handed alpha
Helix 61	AG7	D	344	347	Right-handed 310
Helix 62	AG8	D	350	355	Right-handed alpha

There are 12 sheets in PDB entry 7JW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	288	289	anti-parallel
Strand 3	A	302	305	anti-parallel
Strand 4	A	221	230	parallel
Strand 5	A	322	328	parallel
Strand 6	A	2	6	parallel
Strand 7	A	44	46	parallel
Strand 8	A	71	76	parallel
Strand 9	A	101	105	parallel
Strand 10	A	172	175	parallel
Strand 11	A	191	195	parallel
Strand 12	A	221	230	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	22	23	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	154	158	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	288	289	anti-parallel
Strand 3	B	302	305	anti-parallel
Strand 4	B	221	230	parallel
Strand 5	B	322	328	parallel
Strand 6	B	2	6	parallel
Strand 7	B	44	47	parallel
Strand 8	B	71	76	parallel
Strand 9	B	101	105	parallel
Strand 10	B	172	175	parallel
Strand 11	B	191	195	parallel
Strand 12	B	221	230	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	22	23	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	154	158	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	288	289	anti-parallel
Strand 3	C	302	305	anti-parallel
Strand 4	C	221	230	parallel
Strand 5	C	322	328	parallel
Strand 6	C	2	6	parallel
Strand 7	C	44	46	parallel
Strand 8	C	71	76	parallel
Strand 9	C	101	105	parallel
Strand 10	C	172	175	parallel
Strand 11	C	191	195	parallel
Strand 12	C	221	230	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	22	23	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	154	158	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	288	289	anti-parallel
Strand 3	D	302	305	anti-parallel
Strand 4	D	221	230	parallel
Strand 5	D	322	328	parallel
Strand 6	D	2	6	parallel
Strand 7	D	44	46	parallel
Strand 8	D	71	76	parallel
Strand 9	D	101	105	parallel
Strand 10	D	172	175	parallel
Strand 11	D	191	195	parallel
Strand 12	D	221	230	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	22	23	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	154	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JW9