Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JWF entry

There are 4 chains in PDB entry 7JWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	ARG 617
B	ASP 25	LYS 616
C	ASP 25	LYS 616
D	ASP 25	LYS 616

There are 28 helices in PDB entry 7JWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	43	58	Right-handed alpha
Helix 3	AA3	A	191	200	Right-handed alpha
Helix 4	AA4	A	201	204	Right-handed 310
Helix 5	AA5	A	371	375	Right-handed 310
Helix 6	AA6	A	522	526	Right-handed 310
Helix 7	AA7	A	604	609	Right-handed alpha
Helix 8	AA8	B	31	34	Right-handed 310
Helix 9	AA9	B	43	58	Right-handed alpha
Helix 10	AB1	B	191	201	Right-handed alpha
Helix 11	AB2	B	202	204	Right-handed 310
Helix 12	AB3	B	371	375	Right-handed 310
Helix 13	AB4	B	522	526	Right-handed 310
Helix 14	AB5	B	604	609	Right-handed alpha
Helix 15	AB6	C	31	34	Right-handed 310
Helix 16	AB7	C	43	58	Right-handed alpha
Helix 17	AB8	C	191	200	Right-handed alpha
Helix 18	AB9	C	201	204	Right-handed 310
Helix 19	AC1	C	371	375	Right-handed 310
Helix 20	AC2	C	522	526	Right-handed 310
Helix 21	AC3	C	604	609	Right-handed alpha
Helix 22	AC4	D	31	34	Right-handed 310
Helix 23	AC5	D	43	58	Right-handed alpha
Helix 24	AC6	D	191	200	Right-handed alpha
Helix 25	AC7	D	201	204	Right-handed 310
Helix 26	AC8	D	371	375	Right-handed 310
Helix 27	AC9	D	522	526	Right-handed 310
Helix 28	AD1	D	604	609	Right-handed alpha

There are 31 sheets in PDB entry 7JWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	61	63	parallel
Strand 3	A	101	114	parallel
Strand 4	A	127	138	parallel
Strand 5	A	276	285	parallel
Strand 6	A	299	304	parallel
Strand 7	A	329	335	parallel
Strand 8	A	439	443	parallel
Strand 9	A	463	466	parallel
Strand 10	A	495	498	parallel
Strand 11	A	532	538	parallel
Strand 12	A	556	562	parallel
Strand 13	A	588	592	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	101	114	parallel
Strand 3	A	127	138	parallel
Strand 4	A	276	285	parallel
Strand 5	A	307	308	parallel
Strand 6	A	338	340	parallel
Strand 7	A	446	448	parallel
Strand 8	A	469	471	parallel
Strand 9	A	501	503	parallel
Strand 10	A	541	544	parallel
Strand 11	A	565	568	parallel
Strand 12	A	597	599	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	89	98	anti-parallel
Strand 3	A	119	124	parallel
Strand 4	A	270	273	parallel
Strand 5	A	293	296	parallel
Strand 6	A	323	326	parallel
Strand 7	A	347	359	parallel
Strand 8	A	488	489	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	89	98	anti-parallel
Strand 3	A	119	124	parallel
Strand 4	A	270	273	parallel
Strand 5	A	293	296	parallel
Strand 6	A	323	326	parallel
Strand 7	A	347	359	parallel
Strand 8	A	455	457	parallel
Strand 9	A	477	479	parallel
Strand 10	A	515	517	parallel
Strand 11	A	551	554	parallel
Strand 12	A	582	585	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	347	359	anti-parallel
Strand 3	A	455	457	parallel
Strand 4	A	477	479	parallel
Strand 5	A	515	517	parallel
Strand 6	A	551	554	parallel
Strand 7	A	582	585	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	347	359	anti-parallel
Strand 3	A	364	368	anti-parallel
Strand 4	A	412	417	anti-parallel
Strand 5	A	395	407	anti-parallel
Strand 6	A	385	390	anti-parallel
Strand 7	A	430	433	anti-parallel
Strand 8	A	347	359	anti-parallel
Strand 9	A	488	489	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	173	176	anti-parallel
Strand 3	A	232	236	anti-parallel
Strand 4	A	243	246	anti-parallel
Strand 5	A	155	159	anti-parallel
Strand 6	A	144	152	anti-parallel
Strand 7	A	257	262	anti-parallel
Strand 8	A	206	213	anti-parallel
Strand 9	A	218	219	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	173	176	anti-parallel
Strand 3	A	232	236	anti-parallel
Strand 4	A	243	246	anti-parallel
Strand 5	A	155	159	anti-parallel
Strand 6	A	144	152	anti-parallel
Strand 7	A	257	262	anti-parallel
Strand 8	A	206	213	anti-parallel
Strand 9	A	226	227	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	61	63	parallel
Strand 3	B	101	114	parallel
Strand 4	B	127	138	parallel
Strand 5	B	276	285	parallel
Strand 6	B	299	304	parallel
Strand 7	B	329	335	parallel
Strand 8	B	439	443	parallel
Strand 9	B	463	466	parallel
Strand 10	B	495	498	parallel
Strand 11	B	532	538	parallel
Strand 12	B	556	562	parallel
Strand 13	B	588	592	parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	71	first strand
Strand 2	B	101	114	parallel
Strand 3	B	127	138	parallel
Strand 4	B	276	285	parallel
Strand 5	B	307	308	parallel
Strand 6	B	338	340	parallel
Strand 7	B	446	448	parallel
Strand 8	B	469	471	parallel
Strand 9	B	501	503	parallel
Strand 10	B	541	544	parallel
Strand 11	B	564	568	parallel
Strand 12	B	596	599	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	89	98	anti-parallel
Strand 3	B	119	124	parallel
Strand 4	B	270	273	parallel
Strand 5	B	293	296	parallel
Strand 6	B	323	326	parallel
Strand 7	B	347	359	parallel
Strand 8	B	488	489	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	89	98	anti-parallel
Strand 3	B	119	124	parallel
Strand 4	B	270	273	parallel
Strand 5	B	293	296	parallel
Strand 6	B	323	326	parallel
Strand 7	B	347	359	parallel
Strand 8	B	455	457	parallel
Strand 9	B	477	479	parallel
Strand 10	B	515	517	parallel
Strand 11	B	551	554	parallel
Strand 12	B	582	585	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	489	first strand
Strand 2	B	347	359	anti-parallel
Strand 3	B	455	457	parallel
Strand 4	B	477	479	parallel
Strand 5	B	515	517	parallel
Strand 6	B	551	554	parallel
Strand 7	B	582	585	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	489	first strand
Strand 2	B	347	359	anti-parallel
Strand 3	B	364	368	anti-parallel
Strand 4	B	412	417	anti-parallel
Strand 5	B	396	407	anti-parallel
Strand 6	B	385	389	anti-parallel
Strand 7	B	430	433	anti-parallel
Strand 8	B	347	359	anti-parallel
Strand 9	B	488	489	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	242	246	anti-parallel
Strand 5	B	155	159	anti-parallel
Strand 6	B	144	152	anti-parallel
Strand 7	B	257	262	anti-parallel
Strand 8	B	206	213	anti-parallel
Strand 9	B	218	219	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	242	246	anti-parallel
Strand 5	B	155	159	anti-parallel
Strand 6	B	144	152	anti-parallel
Strand 7	B	257	262	anti-parallel
Strand 8	B	206	213	anti-parallel
Strand 9	B	226	227	anti-parallel

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There are 13 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	61	63	parallel
Strand 3	C	101	114	parallel
Strand 4	C	127	138	parallel
Strand 5	C	276	285	parallel
Strand 6	C	299	304	parallel
Strand 7	C	329	335	parallel
Strand 8	C	439	443	parallel
Strand 9	C	463	466	parallel
Strand 10	C	495	498	parallel
Strand 11	C	532	538	parallel
Strand 12	C	556	562	parallel
Strand 13	C	588	592	parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	71	first strand
Strand 2	C	101	114	parallel
Strand 3	C	127	138	parallel
Strand 4	C	276	285	parallel
Strand 5	C	307	308	parallel
Strand 6	C	338	340	parallel
Strand 7	C	446	448	parallel
Strand 8	C	469	471	parallel
Strand 9	C	501	503	parallel
Strand 10	C	541	544	parallel
Strand 11	C	565	568	parallel
Strand 12	C	597	599	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	89	98	anti-parallel
Strand 3	C	119	124	parallel
Strand 4	C	270	273	parallel
Strand 5	C	293	296	parallel
Strand 6	C	323	326	parallel
Strand 7	C	347	352	parallel
Strand 8	C	488	489	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	89	98	anti-parallel
Strand 3	C	119	124	parallel
Strand 4	C	270	273	parallel
Strand 5	C	293	296	parallel
Strand 6	C	323	326	parallel
Strand 7	C	347	352	parallel
Strand 8	C	455	457	parallel
Strand 9	C	477	479	parallel
Strand 10	C	515	517	parallel
Strand 11	C	551	554	parallel
Strand 12	C	582	585	parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	242	246	anti-parallel
Strand 5	C	155	159	anti-parallel
Strand 6	C	144	152	anti-parallel
Strand 7	C	257	262	anti-parallel
Strand 8	C	206	213	anti-parallel
Strand 9	C	218	219	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	242	246	anti-parallel
Strand 5	C	155	159	anti-parallel
Strand 6	C	144	152	anti-parallel
Strand 7	C	257	262	anti-parallel
Strand 8	C	206	213	anti-parallel
Strand 9	C	226	227	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	412	417	anti-parallel
Strand 4	C	396	407	anti-parallel
Strand 5	C	385	389	anti-parallel
Strand 6	C	430	433	anti-parallel
Strand 7	C	354	361	anti-parallel

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There are 13 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	61	63	parallel
Strand 3	D	101	114	parallel
Strand 4	D	127	138	parallel
Strand 5	D	276	285	parallel
Strand 6	D	299	304	parallel
Strand 7	D	329	335	parallel
Strand 8	D	439	443	parallel
Strand 9	D	463	466	parallel
Strand 10	D	495	498	parallel
Strand 11	D	532	538	parallel
Strand 12	D	556	562	parallel
Strand 13	D	588	592	parallel

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There are 12 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	101	114	parallel
Strand 3	D	127	138	parallel
Strand 4	D	276	285	parallel
Strand 5	D	307	308	parallel
Strand 6	D	338	340	parallel
Strand 7	D	446	448	parallel
Strand 8	D	469	471	parallel
Strand 9	D	501	503	parallel
Strand 10	D	541	544	parallel
Strand 11	D	565	568	parallel
Strand 12	D	597	599	parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	89	98	anti-parallel
Strand 3	D	119	124	parallel
Strand 4	D	270	273	parallel
Strand 5	D	293	296	parallel
Strand 6	D	323	326	parallel
Strand 7	D	347	359	parallel
Strand 8	D	488	489	anti-parallel

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There are 12 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	89	98	anti-parallel
Strand 3	D	119	124	parallel
Strand 4	D	270	273	parallel
Strand 5	D	293	296	parallel
Strand 6	D	323	326	parallel
Strand 7	D	347	359	parallel
Strand 8	D	455	457	parallel
Strand 9	D	477	479	parallel
Strand 10	D	515	517	parallel
Strand 11	D	551	554	parallel
Strand 12	D	582	585	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	489	first strand
Strand 2	D	347	359	anti-parallel
Strand 3	D	455	457	parallel
Strand 4	D	477	479	parallel
Strand 5	D	515	517	parallel
Strand 6	D	551	554	parallel
Strand 7	D	582	585	parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	489	first strand
Strand 2	D	347	359	anti-parallel
Strand 3	D	364	368	anti-parallel
Strand 4	D	412	417	anti-parallel
Strand 5	D	395	407	anti-parallel
Strand 6	D	385	390	anti-parallel
Strand 7	D	430	433	anti-parallel
Strand 8	D	347	359	anti-parallel
Strand 9	D	488	489	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	173	176	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	242	246	anti-parallel
Strand 5	D	155	159	anti-parallel
Strand 6	D	144	152	anti-parallel
Strand 7	D	257	262	anti-parallel
Strand 8	D	206	213	anti-parallel
Strand 9	D	218	219	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	173	176	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	242	246	anti-parallel
Strand 5	D	155	159	anti-parallel
Strand 6	D	144	152	anti-parallel
Strand 7	D	257	262	anti-parallel
Strand 8	D	206	213	anti-parallel
Strand 9	D	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWF