Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JWK entry

There are 4 chains in PDB entry 7JWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	LEU 337
B	THR 7	LEU 337
C	HIS 5	LEU 337
D	THR 7	CYS 334

There are 51 helices in PDB entry 7JWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	27	Right-handed alpha
Helix 2	AA2	A	42	52	Right-handed alpha
Helix 3	AA3	A	84	88	Right-handed 310
Helix 4	AA4	A	107	117	Right-handed alpha
Helix 5	AA5	A	141	145	Right-handed 310
Helix 6	AA6	A	156	173	Right-handed alpha
Helix 7	AA7	A	205	209	Right-handed 310
Helix 8	AA8	A	216	225	Right-handed alpha
Helix 9	AA9	A	226	229	Right-handed 310
Helix 10	AB1	A	258	269	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed 310
Helix 12	AB3	A	320	336	Right-handed alpha
Helix 13	AB4	B	16	27	Right-handed alpha
Helix 14	AB5	B	42	52	Right-handed alpha
Helix 15	AB6	B	84	88	Right-handed 310
Helix 16	AB7	B	107	117	Right-handed alpha
Helix 17	AB8	B	141	145	Right-handed 310
Helix 18	AB9	B	156	173	Right-handed alpha
Helix 19	AC1	B	205	209	Right-handed 310
Helix 20	AC2	B	216	225	Right-handed alpha
Helix 21	AC3	B	226	229	Right-handed 310
Helix 22	AC4	B	258	269	Right-handed alpha
Helix 23	AC5	B	282	287	Right-handed 310
Helix 24	AC6	B	298	300	Right-handed 310
Helix 25	AC7	B	320	337	Right-handed alpha
Helix 26	AC8	C	16	27	Right-handed alpha
Helix 27	AC9	C	42	52	Right-handed alpha
Helix 28	AD1	C	84	88	Right-handed 310
Helix 29	AD2	C	107	118	Right-handed alpha
Helix 30	AD3	C	141	145	Right-handed 310
Helix 31	AD4	C	156	173	Right-handed alpha
Helix 32	AD5	C	205	209	Right-handed 310
Helix 33	AD6	C	216	225	Right-handed alpha
Helix 34	AD7	C	226	229	Right-handed 310
Helix 35	AD8	C	258	269	Right-handed alpha
Helix 36	AD9	C	282	287	Right-handed 310
Helix 37	AE1	C	298	300	Right-handed 310
Helix 38	AE2	C	320	337	Right-handed alpha
Helix 39	AE3	D	16	27	Right-handed alpha
Helix 40	AE4	D	42	52	Right-handed alpha
Helix 41	AE5	D	84	88	Right-handed 310
Helix 42	AE6	D	107	118	Right-handed alpha
Helix 43	AE7	D	141	145	Right-handed 310
Helix 44	AE8	D	156	174	Right-handed alpha
Helix 45	AE9	D	205	209	Right-handed 310
Helix 46	AF1	D	216	225	Right-handed alpha
Helix 47	AF2	D	226	229	Right-handed 310
Helix 48	AF3	D	258	269	Right-handed alpha
Helix 49	AF4	D	282	287	Right-handed 310
Helix 50	AF5	D	298	300	Right-handed 310
Helix 51	AF6	D	320	334	Right-handed alpha

There are 12 sheets in PDB entry 7JWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	69	72	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	32	38	parallel
Strand 5	A	8	13	parallel
Strand 6	A	97	100	parallel
Strand 7	A	122	124	parallel
Strand 8	A	151	153	parallel
Strand 9	A	134	135	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	232	239	anti-parallel
Strand 3	A	175	185	parallel
Strand 4	A	245	253	anti-parallel
Strand 5	A	308	317	anti-parallel
Strand 6	A	293	296	anti-parallel
Strand 7	A	274	277	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	213	first strand
Strand 2	A	232	239	anti-parallel
Strand 3	A	175	185	parallel
Strand 4	A	245	253	anti-parallel
Strand 5	A	308	317	anti-parallel
Strand 6	A	301	305	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	32	38	parallel
Strand 5	B	8	13	parallel
Strand 6	B	97	100	parallel
Strand 7	B	121	124	parallel
Strand 8	B	151	153	parallel
Strand 9	B	134	135	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	232	239	anti-parallel
Strand 3	B	175	185	parallel
Strand 4	B	245	253	anti-parallel
Strand 5	B	308	317	anti-parallel
Strand 6	B	293	296	anti-parallel
Strand 7	B	274	277	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	232	239	anti-parallel
Strand 3	B	175	185	parallel
Strand 4	B	245	253	anti-parallel
Strand 5	B	308	317	anti-parallel
Strand 6	B	301	305	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	69	72	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	32	38	parallel
Strand 5	C	8	13	parallel
Strand 6	C	97	100	parallel
Strand 7	C	121	124	parallel
Strand 8	C	151	153	parallel
Strand 9	C	134	135	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	232	239	anti-parallel
Strand 3	C	175	185	parallel
Strand 4	C	245	253	anti-parallel
Strand 5	C	308	317	anti-parallel
Strand 6	C	293	296	anti-parallel
Strand 7	C	274	277	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	232	239	anti-parallel
Strand 3	C	175	185	parallel
Strand 4	C	245	253	anti-parallel
Strand 5	C	308	317	anti-parallel
Strand 6	C	301	305	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	69	72	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	32	38	parallel
Strand 5	D	8	13	parallel
Strand 6	D	97	100	parallel
Strand 7	D	121	124	parallel
Strand 8	D	151	153	parallel
Strand 9	D	134	135	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	213	first strand
Strand 2	D	232	239	anti-parallel
Strand 3	D	175	185	parallel
Strand 4	D	245	253	anti-parallel
Strand 5	D	308	317	anti-parallel
Strand 6	D	293	296	anti-parallel
Strand 7	D	274	277	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	213	first strand
Strand 2	D	232	239	anti-parallel
Strand 3	D	175	185	parallel
Strand 4	D	245	253	anti-parallel
Strand 5	D	308	317	anti-parallel
Strand 6	D	301	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWK