Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JWQ entry

There are 6 chains in PDB entry 7JWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 215
B	ASP 1	GLU 216
C	GLN 1	SER 217
D	ASP 1	GLY 215
V	LEU 250	ASP 255
P	LEU 250	ASP 255

There are 14 helices in PDB entry 7JWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	63	Right-handed 310
Helix 2	AA2	A	84	88	Right-handed 310
Helix 3	AA3	A	189	191	Right-handed 310
Helix 4	AA4	B	29	33	Right-handed 310
Helix 5	AA5	B	81	85	Right-handed 310
Helix 6	AA6	B	124	130	Right-handed alpha
Helix 7	AA7	B	186	191	Right-handed alpha
Helix 8	AA8	C	60	63	Right-handed 310
Helix 9	AA9	C	84	88	Right-handed 310
Helix 10	AB1	C	189	191	Right-handed 310
Helix 11	AB2	D	29	33	Right-handed 310
Helix 12	AB3	D	81	85	Right-handed 310
Helix 13	AB4	D	124	130	Right-handed alpha
Helix 14	AB5	D	186	191	Right-handed alpha

There are 22 sheets in PDB entry 7JWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	66	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	109	113	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	50	anti-parallel
Strand 6	A	56	58	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	109	113	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	104	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	165	167	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	207	212	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	64	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	86	94	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	51	anti-parallel
Strand 6	B	55	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	105	110	parallel
Strand 3	B	86	94	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	132	142	anti-parallel
Strand 3	B	176	185	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	148	153	anti-parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	208	213	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	66	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	109	113	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	50	anti-parallel
Strand 6	C	56	58	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	109	113	parallel
Strand 3	C	89	95	anti-parallel
Strand 4	C	104	105	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	207	212	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	72	77	anti-parallel
Strand 4	D	64	68	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	105	110	parallel
Strand 3	D	86	94	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	105	110	parallel
Strand 3	D	86	94	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	132	142	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	162	166	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	148	153	anti-parallel
Strand 3	D	194	200	anti-parallel
Strand 4	D	208	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWQ