Analysis of interatomic Contacts of Structural Units in PDB entry:
7JWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JWS entry

There is 1 chain in PDB entry 7JWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8SER 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7JWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 71Right-handed alpha
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
81 99Right-handed alpha
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
114 121Right-handed alpha
Helix 6
AA6
A
121 137Right-handed alpha
Helix 7
AA7
A
138 140Right-handed 310
Helix 8
AA8
A
171 186Right-handed alpha
Helix 9
AA9
A
199 213Right-handed alpha
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
247 261Right-handed alpha
Helix 12
AB3
A
283 297Right-handed alpha
Helix 13
AB4
A
298 301Right-handed 310
Helix 14
AB5
A
313 328Right-handed alpha
Helix 15
AB6
A
347 364Right-handed alpha
Helix 16
AB7
A
394 399Right-handed alpha
Helix 17
AB8
A
413 423Right-handed alpha
Helix 18
AB9
A
436 447Right-handed alpha
Helix 19
AC1
A
469 471Right-handed 310
Helix 20
AC2
A
478 484Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7JWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
48 53anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
151 159anti-parallel
Strand 3
A
487 495anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
189 193parallel
Strand 3
A
162 166parallel
Strand 4
A
241 245parallel
Strand 5
A
265 269parallel
Strand 6
A
473 474anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
385 388anti-parallel
Strand 3
A
405 411parallel
Strand 4
A
308 312parallel
Strand 5
A
275 278parallel
Strand 6
A
429 433parallel
Strand 7
A
451 454parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
381 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il