Analysis of interatomic Contacts of Structural Units in PDB entry:
7JXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JXU entry

There are 4 chains in PDB entry 7JXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 191	LYS 471
B	GLU 191	LYS 471
D	VAL 9	THR 101
C	VAL 9	THR 101

There are 28 helices in PDB entry 7JXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	197	202	Right-handed 310
Helix 2	AA2	A	238	253	Right-handed alpha
Helix 3	AA3	A	290	298	Right-handed alpha
Helix 4	AA4	A	302	322	Right-handed alpha
Helix 5	AA5	A	333	335	Right-handed 310
Helix 6	AA6	A	352	360	Right-handed alpha
Helix 7	AA7	A	372	377	Right-handed 310
Helix 8	AA8	A	378	384	Right-handed alpha
Helix 9	AA9	A	390	408	Right-handed alpha
Helix 10	AB1	A	416	425	Right-handed alpha
Helix 11	AB2	A	438	449	Right-handed alpha
Helix 12	AB3	A	452	456	Right-handed 310
Helix 13	AB4	A	458	467	Right-handed alpha
Helix 14	AB5	A	468	470	Right-handed 310
Helix 15	AB6	B	197	202	Right-handed 310
Helix 16	AB7	B	238	253	Right-handed alpha
Helix 17	AB8	B	290	298	Right-handed alpha
Helix 18	AB9	B	302	322	Right-handed alpha
Helix 19	AC1	B	333	335	Right-handed 310
Helix 20	AC2	B	352	360	Right-handed alpha
Helix 21	AC3	B	372	377	Right-handed 310
Helix 22	AC4	B	378	384	Right-handed alpha
Helix 23	AC5	B	390	408	Right-handed alpha
Helix 24	AC6	B	416	425	Right-handed alpha
Helix 25	AC7	B	438	449	Right-handed alpha
Helix 26	AC8	B	452	456	Right-handed 310
Helix 27	AC9	B	458	467	Right-handed alpha
Helix 28	AD1	B	468	470	Right-handed 310

There are 8 sheets in PDB entry 7JXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	278	284	anti-parallel
Strand 5	A	265	271	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	345	347	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	265	271	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	345	347	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	19	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	61	65	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	56	first strand
Strand 2	D	36	43	anti-parallel
Strand 3	D	72	80	anti-parallel
Strand 4	D	95	100	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	18	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	61	65	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	56	first strand
Strand 2	C	36	43	anti-parallel
Strand 3	C	72	80	anti-parallel
Strand 4	C	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JXU