Analysis of interatomic Contacts of Structural Units in PDB entry:
7JY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JY8 entry

There are 2 chains in PDB entry 7JY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	SER 333
B	ALA 1	VAL 323

There are110 helices in PDB entry 7JY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	22	Right-handed alpha
Helix 2	AA2	A	30	36	Right-handed 310
Helix 3	AA3	A	44	51	Right-handed alpha
Helix 4	AA4	A	71	85	Right-handed alpha
Helix 5	AA5	A	100	108	Right-handed alpha
Helix 6	AA6	A	110	114	Right-handed 310
Helix 7	AA7	A	121	136	Right-handed alpha
Helix 8	AA8	A	151	157	Right-handed alpha
Helix 9	AA9	A	165	186	Right-handed alpha
Helix 10	AB1	A	213	219	Right-handed alpha
Helix 11	AB2	A	269	281	Right-handed alpha
Helix 12	AB3	A	301	312	Right-handed alpha
Helix 13	AB4	A	312	328	Right-handed alpha
Helix 14	AB5	B	2	22	Right-handed alpha
Helix 15	AB6	B	23	26	Right-handed 310
Helix 16	AB7	B	30	36	Right-handed 310
Helix 17	AB8	B	44	51	Right-handed alpha
Helix 18	AB9	B	71	85	Right-handed alpha
Helix 19	AC1	B	100	107	Right-handed alpha
Helix 20	AC2	B	121	136	Right-handed alpha
Helix 21	AC3	B	145	149	Right-handed 310
Helix 22	AC4	B	151	157	Right-handed alpha
Helix 23	AC5	B	165	186	Right-handed alpha
Helix 24	AC6	B	213	219	Right-handed alpha
Helix 25	AC7	B	269	281	Right-handed alpha
Helix 26	AC8	B	301	312	Right-handed alpha
Helix 27	AC9	B	312	328	Right-handed alpha
Helix 28	AD1	C	2	22	Right-handed alpha
Helix 29	AD2	C	30	36	Right-handed 310
Helix 30	AD3	C	44	52	Right-handed alpha
Helix 31	AD4	C	71	85	Right-handed alpha
Helix 32	AD5	C	100	107	Right-handed alpha
Helix 33	AD6	C	121	136	Right-handed alpha
Helix 34	AD7	C	145	149	Right-handed 310
Helix 35	AD8	C	151	157	Right-handed alpha
Helix 36	AD9	C	165	186	Right-handed alpha
Helix 37	AE1	C	213	219	Right-handed alpha
Helix 38	AE2	C	269	281	Right-handed alpha
Helix 39	AE3	C	301	312	Right-handed alpha
Helix 40	AE4	C	312	328	Right-handed alpha
Helix 41	AE5	D	2	22	Right-handed alpha
Helix 42	AE6	D	30	36	Right-handed 310
Helix 43	AE7	D	44	51	Right-handed alpha
Helix 44	AE8	D	71	85	Right-handed alpha
Helix 45	AE9	D	100	107	Right-handed alpha
Helix 46	AF1	D	121	136	Right-handed alpha
Helix 47	AF2	D	151	157	Right-handed alpha
Helix 48	AF3	D	165	186	Right-handed alpha
Helix 49	AF4	D	213	219	Right-handed alpha
Helix 50	AF5	D	269	281	Right-handed alpha
Helix 51	AF6	D	301	312	Right-handed alpha
Helix 52	AF7	D	312	328	Right-handed alpha
Helix 53	AF8	E	2	22	Right-handed alpha
Helix 54	AF9	E	30	36	Right-handed 310
Helix 55	AG1	E	44	51	Right-handed alpha
Helix 56	AG2	E	71	85	Right-handed alpha
Helix 57	AG3	E	100	107	Right-handed alpha
Helix 58	AG4	E	121	136	Right-handed alpha
Helix 59	AG5	E	151	157	Right-handed alpha
Helix 60	AG6	E	165	186	Right-handed alpha
Helix 61	AG7	E	213	219	Right-handed alpha
Helix 62	AG8	E	269	281	Right-handed alpha
Helix 63	AG9	E	301	312	Right-handed alpha
Helix 64	AH1	E	312	328	Right-handed alpha
Helix 65	AH2	F	2	22	Right-handed alpha
Helix 66	AH3	F	30	36	Right-handed 310
Helix 67	AH4	F	44	51	Right-handed alpha
Helix 68	AH5	F	71	85	Right-handed alpha
Helix 69	AH6	F	100	108	Right-handed alpha
Helix 70	AH7	F	121	136	Right-handed alpha
Helix 71	AH8	F	151	157	Right-handed alpha
Helix 72	AH9	F	165	186	Right-handed alpha
Helix 73	AI1	F	213	219	Right-handed alpha
Helix 74	AI2	F	269	281	Right-handed alpha
Helix 75	AI3	F	301	312	Right-handed alpha
Helix 76	AI4	F	312	328	Right-handed alpha
Helix 77	AI5	G	2	22	Right-handed alpha
Helix 78	AI6	G	30	36	Right-handed 310
Helix 79	AI7	G	44	51	Right-handed alpha
Helix 80	AI8	G	71	85	Right-handed alpha
Helix 81	AI9	G	100	107	Right-handed alpha
Helix 82	AJ1	G	121	136	Right-handed alpha
Helix 83	AJ2	G	151	157	Right-handed alpha
Helix 84	AJ3	G	165	186	Right-handed alpha
Helix 85	AJ4	G	213	219	Right-handed alpha
Helix 86	AJ5	G	269	281	Right-handed alpha
Helix 87	AJ6	G	301	311	Right-handed alpha
Helix 88	AJ7	G	312	328	Right-handed alpha
Helix 89	AJ8	H	2	22	Right-handed alpha
Helix 90	AJ9	H	44	51	Right-handed alpha
Helix 91	AK1	H	71	85	Right-handed alpha
Helix 92	AK2	H	100	107	Right-handed alpha
Helix 93	AK3	H	121	136	Right-handed alpha
Helix 94	AK4	H	146	149	Right-handed 310
Helix 95	AK5	H	151	157	Right-handed alpha
Helix 96	AK6	H	165	186	Right-handed alpha
Helix 97	AK7	H	213	219	Right-handed alpha
Helix 98	AK8	H	269	281	Right-handed alpha
Helix 99	AK9	H	301	312	Right-handed alpha
Helix 100	AL1	H	312	328	Right-handed alpha
Helix 101	AL2	I	44	51	Right-handed alpha
Helix 102	AL3	I	71	85	Right-handed alpha
Helix 103	AL4	I	100	107	Right-handed alpha
Helix 104	AL5	I	121	136	Right-handed alpha
Helix 105	AL6	I	151	157	Right-handed alpha
Helix 106	AL7	I	165	186	Right-handed alpha
Helix 107	AL8	I	213	219	Right-handed alpha
Helix 108	AL9	I	269	281	Right-handed alpha
Helix 109	AM1	I	301	312	Right-handed alpha
Helix 110	AM2	I	312	328	Right-handed alpha

There are 36 sheets in PDB entry 7JY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	B	115	117	anti-parallel
Strand 3	B	90	94	parallel
Strand 4	B	140	144	parallel
Strand 5	B	188	197	parallel
Strand 6	B	207	209	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	B	115	117	anti-parallel
Strand 3	B	90	94	parallel
Strand 4	B	140	144	parallel
Strand 5	B	188	197	parallel
Strand 6	B	61	66	parallel
Strand 7	B	221	233	parallel
Strand 8	B	236	249	anti-parallel
Strand 9	B	257	263	anti-parallel
Strand 10	B	267	268	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	56	57	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	90	94	parallel
Strand 3	A	140	144	parallel
Strand 4	A	188	197	parallel
Strand 5	A	207	209	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	90	94	parallel
Strand 3	A	140	144	parallel
Strand 4	A	188	197	parallel
Strand 5	A	61	66	parallel
Strand 6	A	221	233	parallel
Strand 7	A	236	249	anti-parallel
Strand 8	A	257	263	anti-parallel
Strand 9	A	267	268	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	290	293	anti-parallel
Strand 3	A	296	300	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	C	115	117	anti-parallel
Strand 3	C	90	94	parallel
Strand 4	C	140	144	parallel
Strand 5	C	188	197	parallel
Strand 6	C	207	209	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	C	115	117	anti-parallel
Strand 3	C	90	94	parallel
Strand 4	C	140	144	parallel
Strand 5	C	188	197	parallel
Strand 6	C	61	66	parallel
Strand 7	C	221	233	parallel
Strand 8	C	236	249	anti-parallel
Strand 9	C	257	263	anti-parallel
Strand 10	C	267	268	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	56	57	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	290	293	anti-parallel
Strand 3	B	296	300	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	D	115	117	anti-parallel
Strand 3	D	90	93	parallel
Strand 4	D	140	144	parallel
Strand 5	D	188	197	parallel
Strand 6	D	207	209	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	D	115	117	anti-parallel
Strand 3	D	90	93	parallel
Strand 4	D	140	144	parallel
Strand 5	D	188	197	parallel
Strand 6	D	61	66	parallel
Strand 7	D	221	233	parallel
Strand 8	D	236	249	anti-parallel
Strand 9	D	257	263	anti-parallel
Strand 10	D	267	268	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	56	57	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	287	first strand
Strand 2	C	290	293	anti-parallel
Strand 3	C	296	300	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	E	115	117	anti-parallel
Strand 3	E	90	93	parallel
Strand 4	E	140	144	parallel
Strand 5	E	188	193	parallel
Strand 6	E	61	65	parallel
Strand 7	E	221	233	parallel
Strand 8	E	236	249	anti-parallel
Strand 9	E	257	263	anti-parallel
Strand 10	E	267	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	56	57	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	290	293	anti-parallel
Strand 3	D	296	300	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	F	115	117	anti-parallel
Strand 3	F	90	93	parallel
Strand 4	F	140	143	parallel
Strand 5	F	188	197	parallel
Strand 6	F	207	209	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	F	115	117	anti-parallel
Strand 3	F	90	93	parallel
Strand 4	F	140	143	parallel
Strand 5	F	188	197	parallel
Strand 6	F	61	66	parallel
Strand 7	F	221	233	parallel
Strand 8	F	236	249	anti-parallel
Strand 9	F	257	263	anti-parallel
Strand 10	F	267	268	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	56	57	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	E	207	209	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	287	first strand
Strand 2	E	290	293	anti-parallel
Strand 3	E	296	300	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	G	115	117	anti-parallel
Strand 3	G	90	94	parallel
Strand 4	G	140	144	parallel
Strand 5	G	188	197	parallel
Strand 6	G	207	209	anti-parallel

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There are 10 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	G	115	117	anti-parallel
Strand 3	G	90	94	parallel
Strand 4	G	140	144	parallel
Strand 5	G	188	197	parallel
Strand 6	G	61	66	parallel
Strand 7	G	221	233	parallel
Strand 8	G	236	249	anti-parallel
Strand 9	G	257	263	anti-parallel
Strand 10	G	267	268	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	40	first strand
Strand 2	F	56	57	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	285	287	first strand
Strand 2	F	290	293	anti-parallel
Strand 3	F	296	300	anti-parallel

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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	H	115	117	anti-parallel
Strand 3	H	90	93	parallel
Strand 4	H	140	144	parallel
Strand 5	H	188	193	parallel
Strand 6	H	61	65	parallel
Strand 7	H	221	233	parallel
Strand 8	H	236	249	anti-parallel
Strand 9	H	257	263	anti-parallel
Strand 10	H	267	268	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	40	first strand
Strand 2	G	56	57	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	285	287	first strand
Strand 2	G	290	293	anti-parallel
Strand 3	G	296	300	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	I	115	117	anti-parallel
Strand 3	I	90	94	parallel
Strand 4	I	140	144	parallel
Strand 5	I	188	197	parallel
Strand 6	I	207	209	anti-parallel

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There are 10 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	I	115	117	anti-parallel
Strand 3	I	90	94	parallel
Strand 4	I	140	144	parallel
Strand 5	I	188	197	parallel
Strand 6	I	61	66	parallel
Strand 7	I	221	233	parallel
Strand 8	I	236	249	anti-parallel
Strand 9	I	257	263	anti-parallel
Strand 10	I	267	268	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	56	57	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	197	first strand
Strand 2	H	207	209	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	285	287	first strand
Strand 2	H	290	293	anti-parallel
Strand 3	H	296	300	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	40	first strand
Strand 2	I	56	57	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	285	287	first strand
Strand 2	I	290	293	anti-parallel
Strand 3	I	296	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JY8