Analysis of interatomic Contacts of Structural Units in PDB entry:
7JYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JYA entry

There are 6 chains in PDB entry 7JYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASN 371
B
 ASP 2ASN 371
C
 ASP 2ASN 371
D
 ARG 15ARG 24
E
 ARG 17ARG 24
F
 TRP 19ARG 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 7JYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
15 24Right-handed alpha
Helix 3
AA3
A
27 35Right-handed alpha
Helix 4
AA4
A
43 51Right-handed alpha
Helix 5
AA5
A
53 64Right-handed alpha
Helix 6
AA6
A
65 68Right-handed 310
Helix 7
AA7
A
85 94Right-handed alpha
Helix 8
AA8
A
95 105Right-handed alpha
Helix 9
AA9
A
118 127Right-handed alpha
Helix 10
AB1
A
128 137Right-handed alpha
Helix 11
AB2
A
151 159Right-handed alpha
Helix 12
AB3
A
161 171Right-handed alpha
Helix 13
AB4
A
184 193Right-handed alpha
Helix 14
AB5
A
194 204Right-handed alpha
Helix 15
AB6
A
216 225Right-handed alpha
Helix 16
AB7
A
226 234Right-handed alpha
Helix 17
AB8
A
240 258Right-handed alpha
Helix 18
AB9
A
261 277Right-handed alpha
Helix 19
AC1
A
293 297Right-handed 310
Helix 20
AC2
A
304 309Right-handed alpha
Helix 21
AC3
A
310 313Right-handed 310
Helix 22
AC4
A
314 331Right-handed alpha
Helix 23
AC5
A
334 351Right-handed alpha
Helix 24
AC6
A
353 370Right-handed alpha
Helix 25
AC7
B
3 13Right-handed alpha
Helix 26
AC8
B
15 23Right-handed alpha
Helix 27
AC9
B
27 35Right-handed alpha
Helix 28
AD1
B
43 51Right-handed alpha
Helix 29
AD2
B
53 64Right-handed alpha
Helix 30
AD3
B
65 70Right-handed 310
Helix 31
AD4
B
85 94Right-handed alpha
Helix 32
AD5
B
95 105Right-handed alpha
Helix 33
AD6
B
118 127Right-handed alpha
Helix 34
AD7
B
128 137Right-handed alpha
Helix 35
AD8
B
151 159Right-handed alpha
Helix 36
AD9
B
161 171Right-handed alpha
Helix 37
AE1
B
184 193Right-handed alpha
Helix 38
AE2
B
194 204Right-handed alpha
Helix 39
AE3
B
216 225Right-handed alpha
Helix 40
AE4
B
226 234Right-handed alpha
Helix 41
AE5
B
240 258Right-handed alpha
Helix 42
AE6
B
261 277Right-handed alpha
Helix 43
AE7
B
278 283Right-handed 310
Helix 44
AE8
B
293 297Right-handed 310
Helix 45
AE9
B
304 310Right-handed alpha
Helix 46
AF1
B
311 313Right-handed 310
Helix 47
AF2
B
314 331Right-handed alpha
Helix 48
AF3
B
334 351Right-handed alpha
Helix 49
AF4
B
353 371Right-handed alpha
Helix 50
AF5
C
3 13Right-handed alpha
Helix 51
AF6
C
15 22Right-handed alpha
Helix 52
AF7
C
27 37Right-handed alpha
Helix 53
AF8
C
43 51Right-handed alpha
Helix 54
AF9
C
53 64Right-handed alpha
Helix 55
AG1
C
85 94Right-handed alpha
Helix 56
AG2
C
95 105Right-handed alpha
Helix 57
AG3
C
118 126Right-handed alpha
Helix 58
AG4
C
128 138Right-handed alpha
Helix 59
AG5
C
151 159Right-handed alpha
Helix 60
AG6
C
161 171Right-handed alpha
Helix 61
AG7
C
184 191Right-handed alpha
Helix 62
AG8
C
194 204Right-handed alpha
Helix 63
AG9
C
216 225Right-handed alpha
Helix 64
AH1
C
226 234Right-handed alpha
Helix 65
AH2
C
240 258Right-handed alpha
Helix 66
AH3
C
261 277Right-handed alpha
Helix 67
AH4
C
293 297Right-handed 310
Helix 68
AH5
C
310 313Right-handed 310
Helix 69
AH6
C
314 330Right-handed alpha
Helix 70
AH7
C
334 351Right-handed alpha
Helix 71
AH8
C
353 371Right-handed alpha
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There are 3 sheets in PDB entry 7JYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
79 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
79 84anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
79 84anti-parallel
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