Analysis of interatomic Contacts of Structural Units in PDB entry:
7JYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JYI entry

There are 4 chains in PDB entry 7JYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 1	ALA 501
D	ALA 1	SER 75
E	ILE 1	ALA 501
F	ALA 1	SER 75

There are 30 helices in PDB entry 7JYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	82	86	Right-handed 310
Helix 2	AA2	C	148	152	Right-handed 310
Helix 3	AA3	C	197	200	Right-handed 310
Helix 4	AA4	C	214	219	Right-handed alpha
Helix 5	AA5	C	238	241	Right-handed 310
Helix 6	AA6	C	261	270	Right-handed alpha
Helix 7	AA7	C	405	425	Right-handed alpha
Helix 8	AA8	C	426	431	Right-handed 310
Helix 9	AA9	C	441	455	Right-handed alpha
Helix 10	AB1	C	461	478	Right-handed alpha
Helix 11	AB2	C	484	496	Right-handed alpha
Helix 12	AB3	D	21	25	Right-handed 310
Helix 13	AB4	D	27	39	Right-handed alpha
Helix 14	AB5	D	40	54	Right-handed alpha
Helix 15	AB6	D	56	71	Right-handed alpha
Helix 16	AB7	D	72	74	Right-handed 310
Helix 17	AB8	E	82	86	Right-handed 310
Helix 18	AB9	E	148	152	Right-handed 310
Helix 19	AC1	E	197	200	Right-handed 310
Helix 20	AC2	E	214	219	Right-handed alpha
Helix 21	AC3	E	238	241	Right-handed 310
Helix 22	AC4	E	261	270	Right-handed alpha
Helix 23	AC5	E	405	425	Right-handed alpha
Helix 24	AC6	E	426	431	Right-handed 310
Helix 25	AC7	E	441	455	Right-handed alpha
Helix 26	AC8	E	461	478	Right-handed alpha
Helix 27	AC9	E	484	496	Right-handed alpha
Helix 28	AD1	F	27	39	Right-handed alpha
Helix 29	AD2	F	41	54	Right-handed alpha
Helix 30	AD3	F	59	71	Right-handed alpha

There are 24 sheets in PDB entry 7JYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	282	284	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	291	294	anti-parallel
Strand 3	C	184	189	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	129	anti-parallel
Strand 3	C	54	73	anti-parallel
Strand 4	C	225	226	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	129	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	212	anti-parallel
Strand 5	C	273	275	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	247	first strand
Strand 2	C	253	257	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	326	327	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	333	first strand
Strand 2	C	371	375	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	383	389	anti-parallel
Strand 3	C	399	402	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	378	379	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	164	169	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	282	284	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	291	294	anti-parallel
Strand 3	E	184	189	anti-parallel
Strand 4	E	175	180	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	95	first strand
Strand 2	E	112	129	anti-parallel
Strand 3	E	54	73	anti-parallel
Strand 4	E	225	226	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	95	first strand
Strand 2	E	112	129	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	212	anti-parallel
Strand 5	E	273	275	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	109	110	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	247	first strand
Strand 2	E	253	257	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	320	first strand
Strand 2	E	326	327	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	333	first strand
Strand 2	E	371	375	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	364	365	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	343	346	first strand
Strand 2	E	383	389	anti-parallel
Strand 3	E	399	402	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	358	first strand
Strand 2	E	378	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JYI