Analysis of interatomic Contacts of Structural Units in PDB entry:
7JYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JYP entry

There is 1 chain in PDB entry 7JYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12PHE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7JYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
51 57Right-handed 310
Helix 3
AA3
A
71 85Right-handed alpha
Helix 4
AA4
A
146 151Right-handed alpha
Helix 5
AA5
A
152 155Right-handed 310
Helix 6
AA6
A
165 177Right-handed alpha
Helix 7
AA7
A
194 203Right-handed alpha
Helix 8
AA8
A
255 259Right-handed 310
Helix 9
AA9
A
287 290Right-handed 310
Helix 10
AB1
A
296 315Right-handed alpha
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There are 6 sheets in PDB entry 7JYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
42 46parallel
Strand 3
A
16 22parallel
Strand 4
A
113 121parallel
Strand 5
A
104 108anti-parallel
Strand 6
A
94 99anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
42 46parallel
Strand 3
A
16 22parallel
Strand 4
A
113 121parallel
Strand 5
A
283 285parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
251 253anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
244 247parallel
Strand 3
A
158 162parallel
Strand 4
A
181 185parallel
Strand 5
A
207 210parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 220first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
237 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il