Analysis of interatomic Contacts of Structural Units in PDB entry:
7JYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JYR entry

There is 1 chain in PDB entry 7JYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1095ILE 1399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7JYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1104 1108Right-handed 310
Helix 2
AA2
A
1112 1114Right-handed 310
Helix 3
AA3
A
1157 1173Right-handed alpha
Helix 4
AA4
A
1204 1212Right-handed alpha
Helix 5
AA5
A
1222 1243Right-handed alpha
Helix 6
AA6
A
1251 1253Right-handed 310
Helix 7
AA7
A
1271 1277Right-handed alpha
Helix 8
AA8
A
1292 1296Right-handed 310
Helix 9
AA9
A
1297 1304Right-handed alpha
Helix 10
AB1
A
1307 1325Right-handed alpha
Helix 11
AB2
A
1334 1344Right-handed alpha
Helix 12
AB3
A
1355 1366Right-handed alpha
Helix 13
AB4
A
1369 1373Right-handed 310
Helix 14
AB5
A
1375 1388Right-handed alpha
Helix 15
AB6
A
1389 1394Right-handed alpha
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There are 3 sheets in PDB entry 7JYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1098first strand
Strand 2
A
1101 1103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1116 1123first strand
Strand 2
A
1129 1135anti-parallel
Strand 3
A
1145 1151anti-parallel
Strand 4
A
1193 1197anti-parallel
Strand 5
A
1182 1186anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1203first strand
Strand 2
A
1255 1257anti-parallel
Strand 3
A
1266 1268anti-parallel
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