Analysis of interatomic Contacts of Structural Units in PDB entry:
7JZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JZK entry

There are 4 chains in PDB entry 7JZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 108LYS 205
D
 MET 191ALA 306
A
 THR 108ALA 212
B
 ALA 195THR 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7JZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
176 180Right-handed 310
Helix 2
AA2
D
192 219Right-handed alpha
Helix 3
AA3
D
228 235Right-handed alpha
Helix 4
AA4
D
239 255Right-handed alpha
Helix 5
AA5
D
264 274Right-handed alpha
Helix 6
AA6
D
286 306Right-handed alpha
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
B
196 219Right-handed alpha
Helix 9
AA9
B
228 235Right-handed alpha
Helix 10
AB1
B
239 255Right-handed alpha
Helix 11
AB2
B
264 274Right-handed alpha
Helix 12
AB3
B
286 317Right-handed alpha
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There are 8 sheets in PDB entry 7JZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 118first strand
Strand 2
C
129 135anti-parallel
Strand 3
C
165 172anti-parallel
Strand 4
C
159 162anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
200 204parallel
Strand 3
C
181 189anti-parallel
Strand 4
C
141 145anti-parallel
Strand 5
C
152 155anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
200 204parallel
Strand 3
C
181 189anti-parallel
Strand 4
C
192 193anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 223first strand
Strand 2
D
226 227anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
159 162anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
200 205parallel
Strand 3
A
181 189anti-parallel
Strand 4
A
141 146anti-parallel
Strand 5
A
152 155anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
200 205parallel
Strand 3
A
181 189anti-parallel
Strand 4
A
192 193anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
226 227anti-parallel
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