Analysis of interatomic Contacts of Structural Units in PDB entry:
7JZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7JZP entry

There are 4 chains in PDB entry 7JZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 276VAL 362
B
 GLY 276VAL 362
C
 ARG 4ILE 10
D
 LEU 5ILE 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7JZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
299 302Right-handed 310
Helix 2
AA2
A
314 320Right-handed alpha
Helix 3
AA3
A
340 351Right-handed alpha
Helix 4
AA4
B
299 302Right-handed 310
Helix 5
AA5
B
314 320Right-handed alpha
Helix 6
AA6
B
340 351Right-handed alpha
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There are 4 sheets in PDB entry 7JZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 284first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
334 335anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 310first strand
Strand 2
A
293 298anti-parallel
Strand 3
C
7 10anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 285first strand
Strand 2
B
353 360anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
334 335anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 310first strand
Strand 2
B
293 298anti-parallel
Strand 3
D
8 10anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il