Analysis of interatomic Contacts of Structural Units in PDB entry:
7JZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7JZV entry

There are 12 chains in PDB entry 7JZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	MET 347
B	MET 26	ASP 122
N	LYS 15	LYS 118
O	ARG 31	ALA 124
P	VAL 46	ALA 135
Q	LYS 16	GLY 102
X	G 1	T 139
Y	A 1	C 139
n	LYS 15	LYS 118
o	LYS 30	LYS 125
p	THR 45	ARG 134
q	ASN 25	GLY 102

There are 48 helices in PDB entry 7JZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	22	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	77	97	Right-handed alpha
Helix 4	AA4	A	203	216	Right-handed alpha
Helix 5	AA5	A	286	290	Right-handed 310
Helix 6	AA6	A	298	312	Right-handed alpha
Helix 7	AA7	A	320	330	Right-handed alpha
Helix 8	AA8	A	331	346	Right-handed alpha
Helix 9	AA9	B	27	46	Right-handed alpha
Helix 10	AB1	B	74	81	Right-handed alpha
Helix 11	AB2	B	91	93	Right-handed 310
Helix 12	AB3	B	98	122	Right-handed alpha
Helix 13	AB4	N	16	21	Right-handed alpha
Helix 14	AB5	N	26	37	Right-handed alpha
Helix 15	AB6	N	46	73	Right-handed alpha
Helix 16	AB7	N	79	90	Right-handed alpha
Helix 17	AB8	N	90	97	Right-handed alpha
Helix 18	AB9	N	112	116	Right-handed 310
Helix 19	AC1	O	37	47	Right-handed alpha
Helix 20	AC2	O	55	84	Right-handed alpha
Helix 21	AC3	O	90	102	Right-handed alpha
Helix 22	AC4	O	105	124	Right-handed alpha
Helix 23	AC5	P	47	57	Right-handed alpha
Helix 24	AC6	P	63	76	Right-handed alpha
Helix 25	AC7	P	85	114	Right-handed alpha
Helix 26	AC8	P	120	132	Right-handed alpha
Helix 27	AC9	Q	24	29	Right-handed 310
Helix 28	AD1	Q	30	41	Right-handed alpha
Helix 29	AD2	Q	49	76	Right-handed alpha
Helix 30	AD3	Q	82	93	Right-handed alpha
Helix 31	AD4	n	16	22	Right-handed alpha
Helix 32	AD5	n	26	37	Right-handed alpha
Helix 33	AD6	n	46	73	Right-handed alpha
Helix 34	AD7	n	79	89	Right-handed alpha
Helix 35	AD8	n	90	98	Right-handed alpha
Helix 36	AD9	n	112	116	Right-handed 310
Helix 37	AE1	o	37	49	Right-handed alpha
Helix 38	AE2	o	55	84	Right-handed alpha
Helix 39	AE3	o	90	102	Right-handed alpha
Helix 40	AE4	o	103	124	Right-handed alpha
Helix 41	AE5	p	46	56	Right-handed alpha
Helix 42	AE6	p	63	76	Right-handed alpha
Helix 43	AE7	p	85	114	Right-handed alpha
Helix 44	AE8	p	120	133	Right-handed alpha
Helix 45	AE9	q	25	29	Right-handed 310
Helix 46	AF1	q	30	41	Right-handed alpha
Helix 47	AF2	q	49	76	Right-handed alpha
Helix 48	AF3	q	82	92	Right-handed alpha

There are 14 sheets in PDB entry 7JZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	34	36	anti-parallel
Strand 3	A	74	75	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	67	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	232	238	anti-parallel
Strand 3	A	249	255	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	61	63	anti-parallel
Strand 3	B	95	97	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	O	88	89	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	78	first strand
Strand 2	O	53	54	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	100	102	first strand
Strand 2	q	96	98	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	83	84	first strand
Strand 2	Q	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	119	first strand
Strand 2	Q	45	46	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	96	98	first strand
Strand 2	n	100	102	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	42	43	first strand
Strand 2	o	88	89	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	77	78	first strand
Strand 2	o	53	54	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	83	84	first strand
Strand 2	q	80	81	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	118	119	first strand
Strand 2	q	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7JZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7JZV