Analysis of interatomic Contacts of Structural Units in PDB entry:
7K01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K01 entry

There are 7 chains in PDB entry 7K01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	SER 168	ASN 639
4	SER 22	LYS 323
7	PRO 101	LYS 766
5	ALA 2	ASP 67
2	LYS 7	ARG 507
0	MET 1	GLN 754
6	LYS 107	LYS 457

There are124 helices in PDB entry 7K01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	170	177	Right-handed alpha
Helix 2	AA2	1	177	188	Right-handed alpha
Helix 3	AA3	1	188	198	Right-handed alpha
Helix 4	AA4	1	205	225	Right-handed alpha
Helix 5	AA5	1	230	237	Right-handed alpha
Helix 6	AA6	1	251	263	Right-handed alpha
Helix 7	AA7	1	263	273	Right-handed alpha
Helix 8	AA8	1	281	295	Right-handed alpha
Helix 9	AA9	1	309	330	Right-handed alpha
Helix 10	AB1	1	338	343	Right-handed alpha
Helix 11	AB2	1	371	391	Right-handed alpha
Helix 12	AB3	1	467	483	Right-handed alpha
Helix 13	AB4	1	496	516	Right-handed alpha
Helix 14	AB5	1	540	565	Right-handed alpha
Helix 15	AB6	1	575	605	Right-handed alpha
Helix 16	AB7	1	606	639	Right-handed alpha
Helix 17	AB8	4	33	43	Right-handed alpha
Helix 18	AB9	4	50	68	Right-handed alpha
Helix 19	AC1	4	116	135	Right-handed alpha
Helix 20	AC2	4	137	143	Right-handed alpha
Helix 21	AC3	4	148	167	Right-handed alpha
Helix 22	AC4	4	192	207	Right-handed alpha
Helix 23	AC5	4	221	231	Right-handed alpha
Helix 24	AC6	4	244	252	Right-handed alpha
Helix 25	AC7	4	313	322	Right-handed alpha
Helix 26	AC8	7	104	109	Right-handed 310
Helix 27	AC9	7	124	128	Right-handed 310
Helix 28	AD1	7	149	161	Right-handed alpha
Helix 29	AD2	7	176	187	Right-handed alpha
Helix 30	AD3	7	189	201	Right-handed alpha
Helix 31	AD4	7	206	219	Right-handed alpha
Helix 32	AD5	7	238	248	Right-handed alpha
Helix 33	AD6	7	262	268	Right-handed alpha
Helix 34	AD7	7	322	333	Right-handed alpha
Helix 35	AD8	7	363	375	Right-handed alpha
Helix 36	AD9	7	391	404	Right-handed alpha
Helix 37	AE1	7	413	425	Right-handed alpha
Helix 38	AE2	7	457	461	Right-handed alpha
Helix 39	AE3	7	468	480	Right-handed alpha
Helix 40	AE4	7	494	506	Right-handed alpha
Helix 41	AE5	7	526	532	Right-handed alpha
Helix 42	AE6	7	539	544	Right-handed alpha
Helix 43	AE7	7	562	572	Right-handed alpha
Helix 44	AE8	7	576	583	Right-handed alpha
Helix 45	AE9	7	584	602	Right-handed alpha
Helix 46	AF1	7	612	623	Right-handed alpha
Helix 47	AF2	7	632	645	Right-handed alpha
Helix 48	AF3	7	681	691	Right-handed alpha
Helix 49	AF4	7	715	730	Right-handed alpha
Helix 50	AF5	7	752	766	Right-handed alpha
Helix 51	AF6	5	13	27	Right-handed alpha
Helix 52	AF7	5	43	62	Right-handed alpha
Helix 53	AF8	2	9	17	Right-handed alpha
Helix 54	AF9	2	18	27	Right-handed alpha
Helix 55	AG1	2	28	37	Right-handed alpha
Helix 56	AG2	2	40	51	Right-handed alpha
Helix 57	AG3	2	59	65	Right-handed alpha
Helix 58	AG4	2	70	85	Right-handed alpha
Helix 59	AG5	2	101	113	Right-handed alpha
Helix 60	AG6	2	119	123	Right-handed 310
Helix 61	AG7	2	135	152	Right-handed alpha
Helix 62	AG8	2	160	170	Right-handed alpha
Helix 63	AG9	2	185	194	Right-handed alpha
Helix 64	AH1	2	196	211	Right-handed alpha
Helix 65	AH2	2	217	231	Right-handed alpha
Helix 66	AH3	2	243	256	Right-handed alpha
Helix 67	AH4	2	272	280	Right-handed alpha
Helix 68	AH5	2	353	362	Right-handed alpha
Helix 69	AH6	2	379	389	Right-handed alpha
Helix 70	AH7	2	394	403	Right-handed alpha
Helix 71	AH8	2	404	407	Right-handed 310
Helix 72	AH9	2	408	417	Right-handed alpha
Helix 73	AI1	2	434	448	Right-handed alpha
Helix 74	AI2	2	464	479	Right-handed alpha
Helix 75	AI3	2	495	507	Right-handed alpha
Helix 76	AI4	0	18	34	Right-handed alpha
Helix 77	AI5	0	47	63	Right-handed alpha
Helix 78	AI6	0	75	98	Right-handed alpha
Helix 79	AI7	0	117	123	Right-handed alpha
Helix 80	AI8	0	125	137	Right-handed alpha
Helix 81	AI9	0	140	148	Right-handed alpha
Helix 82	AJ1	0	157	165	Right-handed alpha
Helix 83	AJ2	0	177	188	Right-handed alpha
Helix 84	AJ3	0	191	200	Right-handed alpha
Helix 85	AJ4	0	210	215	Right-handed alpha
Helix 86	AJ5	0	240	249	Right-handed alpha
Helix 87	AJ6	0	253	278	Right-handed alpha
Helix 88	AJ7	0	279	292	Right-handed alpha
Helix 89	AJ8	0	294	299	Right-handed alpha
Helix 90	AJ9	0	322	326	Right-handed 310
Helix 91	AK1	0	327	347	Right-handed alpha
Helix 92	AK2	0	355	367	Right-handed alpha
Helix 93	AK3	0	370	376	Right-handed alpha
Helix 94	AK4	0	376	389	Right-handed alpha
Helix 95	AK5	0	393	395	Right-handed 310
Helix 96	AK6	0	396	412	Right-handed alpha
Helix 97	AK7	0	424	428	Right-handed 310
Helix 98	AK8	0	442	453	Right-handed alpha
Helix 99	AK9	0	467	474	Right-handed alpha
Helix 100	AL1	0	515	533	Right-handed alpha
Helix 101	AL2	0	543	557	Right-handed alpha
Helix 102	AL3	0	558	567	Right-handed alpha
Helix 103	AL4	0	575	592	Right-handed alpha
Helix 104	AL5	0	604	610	Right-handed alpha
Helix 105	AL6	0	633	646	Right-handed alpha
Helix 106	AL7	0	649	667	Right-handed alpha
Helix 107	AL8	0	668	670	Right-handed 310
Helix 108	AL9	0	685	690	Right-handed alpha
Helix 109	AM1	0	694	701	Right-handed alpha
Helix 110	AM2	0	702	706	Right-handed 310
Helix 111	AM3	0	709	726	Right-handed alpha
Helix 112	AM4	0	733	738	Right-handed alpha
Helix 113	AM5	0	743	752	Right-handed alpha
Helix 114	AM6	6	133	138	Right-handed 310
Helix 115	AM7	6	144	164	Right-handed alpha
Helix 116	AM8	6	188	201	Right-handed alpha
Helix 117	AM9	6	209	221	Right-handed alpha
Helix 118	AN1	6	246	257	Right-handed alpha
Helix 119	AN2	6	270	281	Right-handed alpha
Helix 120	AN3	6	293	306	Right-handed alpha
Helix 121	AN4	6	373	384	Right-handed alpha
Helix 122	AN5	6	418	423	Right-handed alpha
Helix 123	AN6	6	437	447	Right-handed alpha
Helix 124	AN7	6	451	456	Right-handed alpha

There are 16 sheets in PDB entry 7K01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	73	76	first strand
Strand 2	4	26	29	parallel
Strand 3	4	175	176	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	179	182	first strand
Strand 2	4	212	216	parallel
Strand 3	4	235	238	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	295	296	first strand
Strand 2	4	287	288	anti-parallel
Strand 3	6	320	323	anti-parallel
Strand 4	6	369	370	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	382	385	first strand
Strand 2	7	511	514	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	453	456	first strand
Strand 2	7	407	411	parallel
Strand 3	7	484	486	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	651	654	first strand
Strand 2	7	605	608	parallel
Strand 3	7	669	672	parallel
Strand 4	7	703	707	parallel
Strand 5	7	552	555	parallel
Strand 6	7	732	734	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	558	559	first strand
Strand 2	7	709	710	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	33	36	first strand
Strand 2	5	39	42	anti-parallel
Strand 3	5	8	11	anti-parallel
Strand 4	2	452	453	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	57	58	first strand
Strand 2	2	97	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	457	458	first strand
Strand 2	2	492	493	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	3	4	first strand
Strand 2	0	9	10	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	105	108	first strand
Strand 2	205	208	parallel
Strand 3	69	71	parallel
Strand 4	231	235	parallel
Strand 5	456	460	parallel
Strand 6	40	41	parallel
Strand 7	481	482	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	416	418	first strand
Strand 2	0	437	439	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	537	541	first strand
Strand 2	596	601	parallel
Strand 3	568	571	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	181	186	first strand
Strand 2	6	168	172	anti-parallel
Strand 3	6	125	129	parallel
Strand 4	6	230	234	parallel
Strand 5	6	261	263	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	347	348	first strand
Strand 2	6	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K01

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K01