Analysis of interatomic Contacts of Structural Units in PDB entry:
7K08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K08 entry

There are 9 chains in PDB entry 7K08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 344	ALA 675
B	GLN 344	ALA 675
C	GLN 344	ALA 675
D	GLN 344	ALA 675
E	GLN 344	ALA 675
F	GLN 344	ALA 675
G	GLN 344	ALA 675
H	GLN 344	ALA 675
I	GLN 344	ALA 675

There are171 helices in PDB entry 7K08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	363	382	Right-handed alpha
Helix 2	AA2	A	450	455	Right-handed alpha
Helix 3	AA3	A	456	457	Right-handed 310
Helix 4	AA4	A	458	462	Right-handed 310
Helix 5	AA5	A	464	478	Right-handed alpha
Helix 6	AA6	A	486	494	Right-handed alpha
Helix 7	AA7	A	497	501	Right-handed 310
Helix 8	AA8	A	502	512	Right-handed alpha
Helix 9	AA9	A	512	525	Right-handed alpha
Helix 10	AB1	A	526	528	Right-handed 310
Helix 11	AB2	A	533	548	Right-handed alpha
Helix 12	AB3	A	552	562	Right-handed alpha
Helix 13	AB4	A	562	571	Right-handed alpha
Helix 14	AB5	A	572	575	Right-handed 310
Helix 15	AB6	A	583	591	Right-handed alpha
Helix 16	AB7	A	599	603	Right-handed 310
Helix 17	AB8	A	606	619	Right-handed alpha
Helix 18	AB9	A	635	645	Right-handed alpha
Helix 19	AC1	A	656	658	Right-handed 310
Helix 20	AC2	B	363	382	Right-handed alpha
Helix 21	AC3	B	450	455	Right-handed alpha
Helix 22	AC4	B	456	457	Right-handed 310
Helix 23	AC5	B	458	462	Right-handed 310
Helix 24	AC6	B	464	478	Right-handed alpha
Helix 25	AC7	B	486	494	Right-handed alpha
Helix 26	AC8	B	497	501	Right-handed 310
Helix 27	AC9	B	502	512	Right-handed alpha
Helix 28	AD1	B	512	525	Right-handed alpha
Helix 29	AD2	B	526	528	Right-handed 310
Helix 30	AD3	B	533	548	Right-handed alpha
Helix 31	AD4	B	552	562	Right-handed alpha
Helix 32	AD5	B	562	571	Right-handed alpha
Helix 33	AD6	B	572	575	Right-handed 310
Helix 34	AD7	B	583	591	Right-handed alpha
Helix 35	AD8	B	599	603	Right-handed 310
Helix 36	AD9	B	606	619	Right-handed alpha
Helix 37	AE1	B	635	645	Right-handed alpha
Helix 38	AE2	B	656	658	Right-handed 310
Helix 39	AE3	C	363	382	Right-handed alpha
Helix 40	AE4	C	450	455	Right-handed alpha
Helix 41	AE5	C	456	457	Right-handed 310
Helix 42	AE6	C	458	462	Right-handed 310
Helix 43	AE7	C	464	478	Right-handed alpha
Helix 44	AE8	C	486	494	Right-handed alpha
Helix 45	AE9	C	497	501	Right-handed 310
Helix 46	AF1	C	502	512	Right-handed alpha
Helix 47	AF2	C	512	525	Right-handed alpha
Helix 48	AF3	C	526	528	Right-handed 310
Helix 49	AF4	C	533	548	Right-handed alpha
Helix 50	AF5	C	552	562	Right-handed alpha
Helix 51	AF6	C	562	571	Right-handed alpha
Helix 52	AF7	C	572	575	Right-handed 310
Helix 53	AF8	C	583	591	Right-handed alpha
Helix 54	AF9	C	599	603	Right-handed 310
Helix 55	AG1	C	606	619	Right-handed alpha
Helix 56	AG2	C	635	645	Right-handed alpha
Helix 57	AG3	C	656	658	Right-handed 310
Helix 58	AG4	D	363	382	Right-handed alpha
Helix 59	AG5	D	450	455	Right-handed alpha
Helix 60	AG6	D	456	457	Right-handed 310
Helix 61	AG7	D	458	462	Right-handed 310
Helix 62	AG8	D	464	478	Right-handed alpha
Helix 63	AG9	D	486	494	Right-handed alpha
Helix 64	AH1	D	497	501	Right-handed 310
Helix 65	AH2	D	502	512	Right-handed alpha
Helix 66	AH3	D	512	525	Right-handed alpha
Helix 67	AH4	D	526	528	Right-handed 310
Helix 68	AH5	D	533	548	Right-handed alpha
Helix 69	AH6	D	552	562	Right-handed alpha
Helix 70	AH7	D	562	571	Right-handed alpha
Helix 71	AH8	D	572	575	Right-handed 310
Helix 72	AH9	D	583	591	Right-handed alpha
Helix 73	AI1	D	599	603	Right-handed 310
Helix 74	AI2	D	606	619	Right-handed alpha
Helix 75	AI3	D	635	645	Right-handed alpha
Helix 76	AI4	D	656	658	Right-handed 310
Helix 77	AI5	E	363	382	Right-handed alpha
Helix 78	AI6	E	450	455	Right-handed alpha
Helix 79	AI7	E	456	457	Right-handed 310
Helix 80	AI8	E	458	462	Right-handed 310
Helix 81	AI9	E	464	478	Right-handed alpha
Helix 82	AJ1	E	486	494	Right-handed alpha
Helix 83	AJ2	E	497	501	Right-handed 310
Helix 84	AJ3	E	502	512	Right-handed alpha
Helix 85	AJ4	E	512	525	Right-handed alpha
Helix 86	AJ5	E	526	528	Right-handed 310
Helix 87	AJ6	E	533	548	Right-handed alpha
Helix 88	AJ7	E	552	562	Right-handed alpha
Helix 89	AJ8	E	562	571	Right-handed alpha
Helix 90	AJ9	E	572	575	Right-handed 310
Helix 91	AK1	E	583	591	Right-handed alpha
Helix 92	AK2	E	599	603	Right-handed 310
Helix 93	AK3	E	606	619	Right-handed alpha
Helix 94	AK4	E	635	645	Right-handed alpha
Helix 95	AK5	E	656	658	Right-handed 310
Helix 96	AK6	F	363	382	Right-handed alpha
Helix 97	AK7	F	450	455	Right-handed alpha
Helix 98	AK8	F	456	457	Right-handed 310
Helix 99	AK9	F	458	462	Right-handed 310
Helix 100	AL1	F	464	478	Right-handed alpha
Helix 101	AL2	F	486	494	Right-handed alpha
Helix 102	AL3	F	497	501	Right-handed 310
Helix 103	AL4	F	502	512	Right-handed alpha
Helix 104	AL5	F	512	525	Right-handed alpha
Helix 105	AL6	F	526	528	Right-handed 310
Helix 106	AL7	F	533	548	Right-handed alpha
Helix 107	AL8	F	552	562	Right-handed alpha
Helix 108	AL9	F	562	571	Right-handed alpha
Helix 109	AM1	F	572	575	Right-handed 310
Helix 110	AM2	F	583	591	Right-handed alpha
Helix 111	AM3	F	599	603	Right-handed 310
Helix 112	AM4	F	606	619	Right-handed alpha
Helix 113	AM5	F	635	645	Right-handed alpha
Helix 114	AM6	F	656	658	Right-handed 310
Helix 115	AM7	G	363	382	Right-handed alpha
Helix 116	AM8	G	450	455	Right-handed alpha
Helix 117	AM9	G	456	457	Right-handed 310
Helix 118	AN1	G	458	462	Right-handed 310
Helix 119	AN2	G	464	478	Right-handed alpha
Helix 120	AN3	G	486	494	Right-handed alpha
Helix 121	AN4	G	497	501	Right-handed 310
Helix 122	AN5	G	502	512	Right-handed alpha
Helix 123	AN6	G	512	525	Right-handed alpha
Helix 124	AN7	G	526	528	Right-handed 310
Helix 125	AN8	G	533	548	Right-handed alpha
Helix 126	AN9	G	552	562	Right-handed alpha
Helix 127	AO1	G	562	571	Right-handed alpha
Helix 128	AO2	G	572	575	Right-handed 310
Helix 129	AO3	G	583	591	Right-handed alpha
Helix 130	AO4	G	599	603	Right-handed 310
Helix 131	AO5	G	606	619	Right-handed alpha
Helix 132	AO6	G	635	645	Right-handed alpha
Helix 133	AO7	G	656	658	Right-handed 310
Helix 134	AO8	H	363	382	Right-handed alpha
Helix 135	AO9	H	450	455	Right-handed alpha
Helix 136	AP1	H	456	457	Right-handed 310
Helix 137	AP2	H	458	462	Right-handed 310
Helix 138	AP3	H	464	478	Right-handed alpha
Helix 139	AP4	H	486	494	Right-handed alpha
Helix 140	AP5	H	497	501	Right-handed 310
Helix 141	AP6	H	502	512	Right-handed alpha
Helix 142	AP7	H	512	525	Right-handed alpha
Helix 143	AP8	H	526	528	Right-handed 310
Helix 144	AP9	H	533	548	Right-handed alpha
Helix 145	AQ1	H	552	562	Right-handed alpha
Helix 146	AQ2	H	562	571	Right-handed alpha
Helix 147	AQ3	H	572	575	Right-handed 310
Helix 148	AQ4	H	583	591	Right-handed alpha
Helix 149	AQ5	H	599	603	Right-handed 310
Helix 150	AQ6	H	606	619	Right-handed alpha
Helix 151	AQ7	H	635	645	Right-handed alpha
Helix 152	AQ8	H	656	658	Right-handed 310
Helix 153	AQ9	I	363	382	Right-handed alpha
Helix 154	AR1	I	450	455	Right-handed alpha
Helix 155	AR2	I	456	457	Right-handed 310
Helix 156	AR3	I	458	462	Right-handed 310
Helix 157	AR4	I	464	478	Right-handed alpha
Helix 158	AR5	I	486	494	Right-handed alpha
Helix 159	AR6	I	497	501	Right-handed 310
Helix 160	AR7	I	502	512	Right-handed alpha
Helix 161	AR8	I	512	525	Right-handed alpha
Helix 162	AR9	I	526	528	Right-handed 310
Helix 163	AS1	I	533	548	Right-handed alpha
Helix 164	AS2	I	552	562	Right-handed alpha
Helix 165	AS3	I	562	571	Right-handed alpha
Helix 166	AS4	I	572	575	Right-handed 310
Helix 167	AS5	I	583	591	Right-handed alpha
Helix 168	AS6	I	599	603	Right-handed 310
Helix 169	AS7	I	606	619	Right-handed alpha
Helix 170	AS8	I	635	645	Right-handed alpha
Helix 171	AS9	I	656	658	Right-handed 310

There are 27 sheets in PDB entry 7K08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	353	356	parallel
Strand 3	A	401	404	anti-parallel
Strand 4	A	407	410	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	432	436	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	654	first strand
Strand 2	A	629	631	parallel
Strand 3	A	576	581	parallel
Strand 4	A	664	669	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	354	356	parallel
Strand 3	B	401	404	anti-parallel
Strand 4	B	407	410	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	432	436	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	654	first strand
Strand 2	B	629	631	parallel
Strand 3	B	576	581	parallel
Strand 4	B	664	669	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	353	356	parallel
Strand 3	C	401	404	anti-parallel
Strand 4	C	407	410	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	442	447	anti-parallel
Strand 3	C	432	436	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	654	first strand
Strand 2	C	629	631	parallel
Strand 3	C	576	581	parallel
Strand 4	C	664	669	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	353	356	parallel
Strand 3	D	401	404	anti-parallel
Strand 4	D	407	410	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	442	447	anti-parallel
Strand 3	D	432	436	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	652	654	first strand
Strand 2	D	629	631	parallel
Strand 3	D	576	581	parallel
Strand 4	D	664	669	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	390	first strand
Strand 2	E	353	356	parallel
Strand 3	E	401	404	anti-parallel
Strand 4	E	407	410	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	420	first strand
Strand 2	E	442	447	anti-parallel
Strand 3	E	432	436	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	652	654	first strand
Strand 2	E	629	631	parallel
Strand 3	E	576	581	parallel
Strand 4	E	664	669	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	390	first strand
Strand 2	F	353	356	parallel
Strand 3	F	401	404	anti-parallel
Strand 4	F	407	410	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	420	first strand
Strand 2	F	442	447	anti-parallel
Strand 3	F	432	436	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	652	654	first strand
Strand 2	F	629	631	parallel
Strand 3	F	576	581	parallel
Strand 4	F	664	669	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	389	390	first strand
Strand 2	G	353	356	parallel
Strand 3	G	401	404	anti-parallel
Strand 4	G	407	410	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	418	420	first strand
Strand 2	G	442	447	anti-parallel
Strand 3	G	432	436	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	652	654	first strand
Strand 2	G	629	631	parallel
Strand 3	G	576	581	parallel
Strand 4	G	664	669	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	389	390	first strand
Strand 2	H	353	356	parallel
Strand 3	H	401	404	anti-parallel
Strand 4	H	407	410	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	418	420	first strand
Strand 2	H	442	447	anti-parallel
Strand 3	H	432	436	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	652	654	first strand
Strand 2	H	629	631	parallel
Strand 3	H	576	581	parallel
Strand 4	H	664	669	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	389	390	first strand
Strand 2	I	353	356	parallel
Strand 3	I	401	404	anti-parallel
Strand 4	I	407	410	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	418	420	first strand
Strand 2	I	442	447	anti-parallel
Strand 3	I	432	436	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	652	654	first strand
Strand 2	I	629	631	parallel
Strand 3	I	576	581	parallel
Strand 4	I	664	669	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K08

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K08