Analysis of interatomic Contacts of Structural Units in PDB entry:
7K09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K09 entry

There are 4 chains in PDB entry 7K09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6ALA 199
B
 PRO 6PRO 197
C
 PRO 6ALA 199
D
 LYS 5ALA 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 7K09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
30 37Right-handed alpha
Helix 4
AA4
A
41 57Right-handed alpha
Helix 5
AA5
A
57 62Right-handed alpha
Helix 6
AA6
A
85 100Right-handed alpha
Helix 7
AA7
A
102 114Right-handed alpha
Helix 8
AA8
A
115 117Right-handed 310
Helix 9
AA9
A
132 135Right-handed 310
Helix 10
AB1
A
138 154Right-handed alpha
Helix 11
AB2
A
164 166Right-handed 310
Helix 12
AB3
A
167 174Right-handed alpha
Helix 13
AB4
B
12 14Right-handed 310
Helix 14
AB5
B
15 27Right-handed alpha
Helix 15
AB6
B
30 37Right-handed alpha
Helix 16
AB7
B
41 57Right-handed alpha
Helix 17
AB8
B
57 62Right-handed alpha
Helix 18
AB9
B
85 100Right-handed alpha
Helix 19
AC1
B
102 114Right-handed alpha
Helix 20
AC2
B
115 117Right-handed 310
Helix 21
AC3
B
132 135Right-handed 310
Helix 22
AC4
B
138 154Right-handed alpha
Helix 23
AC5
B
166 174Right-handed alpha
Helix 24
AC6
C
12 14Right-handed 310
Helix 25
AC7
C
15 27Right-handed alpha
Helix 26
AC8
C
30 37Right-handed alpha
Helix 27
AC9
C
41 57Right-handed alpha
Helix 28
AD1
C
57 62Right-handed alpha
Helix 29
AD2
C
85 100Right-handed alpha
Helix 30
AD3
C
102 114Right-handed alpha
Helix 31
AD4
C
115 117Right-handed 310
Helix 32
AD5
C
132 135Right-handed 310
Helix 33
AD6
C
138 154Right-handed alpha
Helix 34
AD7
C
164 166Right-handed 310
Helix 35
AD8
C
167 174Right-handed alpha
Helix 36
AD9
D
12 14Right-handed 310
Helix 37
AE1
D
15 27Right-handed alpha
Helix 38
AE2
D
30 37Right-handed alpha
Helix 39
AE3
D
41 57Right-handed alpha
Helix 40
AE4
D
57 62Right-handed alpha
Helix 41
AE5
D
85 100Right-handed alpha
Helix 42
AE6
D
102 114Right-handed alpha
Helix 43
AE7
D
115 117Right-handed 310
Helix 44
AE8
D
132 135Right-handed 310
Helix 45
AE9
D
138 154Right-handed alpha
Helix 46
AF1
D
166 174Right-handed alpha
Helix 47
AF2
E
12 14Right-handed 310
Helix 48
AF3
E
15 27Right-handed alpha
Helix 49
AF4
E
30 37Right-handed alpha
Helix 50
AF5
E
41 57Right-handed alpha
Helix 51
AF6
E
57 62Right-handed alpha
Helix 52
AF7
E
85 100Right-handed alpha
Helix 53
AF8
E
102 114Right-handed alpha
Helix 54
AF9
E
115 117Right-handed 310
Helix 55
AG1
E
132 135Right-handed 310
Helix 56
AG2
E
138 154Right-handed alpha
Helix 57
AG3
E
166 174Right-handed alpha
Helix 58
AG4
F
12 14Right-handed 310
Helix 59
AG5
F
15 27Right-handed alpha
Helix 60
AG6
F
30 37Right-handed alpha
Helix 61
AG7
F
41 57Right-handed alpha
Helix 62
AG8
F
57 62Right-handed alpha
Helix 63
AG9
F
85 100Right-handed alpha
Helix 64
AH1
F
102 114Right-handed alpha
Helix 65
AH2
F
115 117Right-handed 310
Helix 66
AH3
F
132 135Right-handed 310
Helix 67
AH4
F
138 154Right-handed alpha
Helix 68
AH5
F
166 174Right-handed alpha
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There are 6 sheets in PDB entry 7K09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
123 130anti-parallel
Strand 5
A
158 162parallel
Strand 6
A
190 195anti-parallel
Strand 7
A
177 182anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
72 77anti-parallel
Strand 4
B
123 130anti-parallel
Strand 5
B
158 162parallel
Strand 6
B
190 195anti-parallel
Strand 7
B
177 182anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
63 67anti-parallel
Strand 3
C
72 77anti-parallel
Strand 4
C
123 130anti-parallel
Strand 5
C
158 162parallel
Strand 6
C
190 195anti-parallel
Strand 7
C
177 182anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
63 67anti-parallel
Strand 3
D
72 77anti-parallel
Strand 4
D
123 130anti-parallel
Strand 5
D
158 162parallel
Strand 6
D
189 195anti-parallel
Strand 7
D
177 183anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 10first strand
Strand 2
E
63 67anti-parallel
Strand 3
E
72 77anti-parallel
Strand 4
E
123 130anti-parallel
Strand 5
E
158 162parallel
Strand 6
E
190 195anti-parallel
Strand 7
E
177 182anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
8 10first strand
Strand 2
F
63 67anti-parallel
Strand 3
F
72 77anti-parallel
Strand 4
F
123 130anti-parallel
Strand 5
F
158 162parallel
Strand 6
F
190 195anti-parallel
Strand 7
F
177 182anti-parallel
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