Analysis of interatomic Contacts of Structural Units in PDB entry:
7K0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K0J entry

There are 4 chains in PDB entry 7K0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 51LEU 473
B
 GLY 53THR 378
B
 SER 380LEU 544
C
 ARG 8ILE 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7K0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 64Right-handed alpha
Helix 2
AA2
A
77 81Right-handed 310
Helix 3
AA3
A
114 129Right-handed alpha
Helix 4
AA4
A
142 156Right-handed alpha
Helix 5
AA5
A
166 179Right-handed alpha
Helix 6
AA6
A
192 202Right-handed alpha
Helix 7
AA7
A
213 231Right-handed alpha
Helix 8
AA8
A
231 236Right-handed alpha
Helix 9
AA9
A
256 268Right-handed alpha
Helix 10
AB1
A
288 294Right-handed alpha
Helix 11
AB2
A
321 326Right-handed alpha
Helix 12
AB3
A
327 332Right-handed alpha
Helix 13
AB4
A
332 337Right-handed alpha
Helix 14
AB5
A
342 359Right-handed alpha
Helix 15
AB6
A
360 377Right-handed alpha
Helix 16
AB7
A
404 422Right-handed alpha
Helix 17
AB8
A
453 472Right-handed alpha
Helix 18
AB9
B
67 94Right-handed alpha
Helix 19
AC1
B
105 109Right-handed 310
Helix 20
AC2
B
116 126Right-handed alpha
Helix 21
AC3
B
127 134Right-handed 310
Helix 22
AC4
B
186 200Right-handed alpha
Helix 23
AC5
B
213 228Right-handed alpha
Helix 24
AC6
B
237 250Right-handed alpha
Helix 25
AC7
B
263 273Right-handed alpha
Helix 26
AC8
B
284 298Right-handed alpha
Helix 27
AC9
B
326 337Right-handed alpha
Helix 28
AD1
B
358 363Right-handed alpha
Helix 29
AD2
B
391 402Right-handed alpha
Helix 30
AD3
B
402 408Right-handed alpha
Helix 31
AD4
B
412 427Right-handed alpha
Helix 32
AD5
B
433 455Right-handed alpha
Helix 33
AD6
B
475 489Right-handed alpha
Helix 34
AD7
B
517 536Right-handed alpha
Helix 35
AD8
C
9 24Right-handed alpha
Helix 36
AD9
C
30 55Right-handed alpha
Helix 37
AE1
C
58 69Right-handed alpha
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There are 6 sheets in PDB entry 7K0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
424 425parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
316 320anti-parallel
Strand 3
A
302 305anti-parallel
Strand 4
A
270 274parallel
Strand 5
A
240 245parallel
Strand 6
A
184 187parallel
Strand 7
A
205 206parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 386first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
444 447anti-parallel
Strand 4
A
427 428anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 153first strand
Strand 2
B
160 172anti-parallel
Strand 3
B
491 492parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 235first strand
Strand 2
B
386 390anti-parallel
Strand 3
B
372 375anti-parallel
Strand 4
B
340 345parallel
Strand 5
B
309 315parallel
Strand 6
B
254 259parallel
Strand 7
B
276 280parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 472first strand
Strand 2
B
507 511anti-parallel
Strand 3
B
494 496anti-parallel
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