Analysis of interatomic Contacts of Structural Units in PDB entry:
7K0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K0V entry

There are 4 chains in PDB entry 7K0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 449	SER 722
B	ASP 449	SER 722
C	ASP 448	SER 722
D	ASP 449	SER 722

There are 48 helices in PDB entry 7K0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	491	507	Right-handed alpha
Helix 2	AA2	A	537	543	Right-handed alpha
Helix 3	AA3	A	549	570	Right-handed alpha
Helix 4	AA4	A	578	580	Right-handed 310
Helix 5	AA5	A	616	620	Right-handed 310
Helix 6	AA6	A	621	627	Right-handed alpha
Helix 7	AA7	A	634	652	Right-handed alpha
Helix 8	AA8	A	661	671	Right-handed alpha
Helix 9	AA9	A	677	681	Right-handed 310
Helix 10	AB1	A	686	697	Right-handed alpha
Helix 11	AB2	A	700	704	Right-handed 310
Helix 12	AB3	A	706	722	Right-handed alpha
Helix 13	AB4	B	491	506	Right-handed alpha
Helix 14	AB5	B	537	543	Right-handed alpha
Helix 15	AB6	B	549	570	Right-handed alpha
Helix 16	AB7	B	578	580	Right-handed 310
Helix 17	AB8	B	616	620	Right-handed 310
Helix 18	AB9	B	621	627	Right-handed alpha
Helix 19	AC1	B	634	652	Right-handed alpha
Helix 20	AC2	B	661	671	Right-handed alpha
Helix 21	AC3	B	677	681	Right-handed 310
Helix 22	AC4	B	686	697	Right-handed alpha
Helix 23	AC5	B	700	704	Right-handed 310
Helix 24	AC6	B	706	720	Right-handed alpha
Helix 25	AC7	C	491	506	Right-handed alpha
Helix 26	AC8	C	537	543	Right-handed alpha
Helix 27	AC9	C	549	570	Right-handed alpha
Helix 28	AD1	C	578	580	Right-handed 310
Helix 29	AD2	C	616	620	Right-handed 310
Helix 30	AD3	C	621	627	Right-handed alpha
Helix 31	AD4	C	634	652	Right-handed alpha
Helix 32	AD5	C	662	671	Right-handed alpha
Helix 33	AD6	C	677	681	Right-handed 310
Helix 34	AD7	C	686	697	Right-handed alpha
Helix 35	AD8	C	700	704	Right-handed 310
Helix 36	AD9	C	706	721	Right-handed alpha
Helix 37	AE1	D	491	506	Right-handed alpha
Helix 38	AE2	D	537	543	Right-handed alpha
Helix 39	AE3	D	549	570	Right-handed alpha
Helix 40	AE4	D	578	580	Right-handed 310
Helix 41	AE5	D	610	620	Right-handed 310
Helix 42	AE6	D	621	627	Right-handed alpha
Helix 43	AE7	D	634	652	Right-handed alpha
Helix 44	AE8	D	661	672	Right-handed alpha
Helix 45	AE9	D	677	681	Right-handed 310
Helix 46	AF1	D	686	697	Right-handed alpha
Helix 47	AF2	D	700	704	Right-handed 310
Helix 48	AF3	D	706	721	Right-handed alpha

There are 8 sheets in PDB entry 7K0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	465	first strand
Strand 2	A	470	475	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	526	530	anti-parallel
Strand 5	A	516	520	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	582	585	anti-parallel
Strand 3	A	589	592	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	462	first strand
Strand 2	B	471	475	anti-parallel
Strand 3	B	479	485	anti-parallel
Strand 4	B	525	530	anti-parallel
Strand 5	B	516	520	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	582	585	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	465	first strand
Strand 2	C	469	475	anti-parallel
Strand 3	C	479	485	anti-parallel
Strand 4	C	526	530	anti-parallel
Strand 5	C	516	520	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	582	585	anti-parallel
Strand 3	C	589	592	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	465	first strand
Strand 2	D	469	475	anti-parallel
Strand 3	D	479	485	anti-parallel
Strand 4	D	526	530	anti-parallel
Strand 5	D	516	520	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	536	first strand
Strand 2	D	582	585	anti-parallel
Strand 3	D	589	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K0V