Analysis of interatomic Contacts of Structural Units in PDB entry:
7K0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K0Z entry

There are 4 chains in PDB entry 7K0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 11	ALA 343
D	SER 4	ILE 224
A	GLN 8	ALA 343
B	CYS 5	SER 225

There are 6 helices in PDB entry 7K0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	95	99	Right-handed 310
Helix 2	AA2	D	138	146	Right-handed alpha
Helix 3	AA3	D	212	216	Right-handed 310
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	95	99	Right-handed 310
Helix 6	AA6	B	212	216	Right-handed 310

There are 28 sheets in PDB entry 7K0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	76	80	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	131	136	parallel
Strand 3	C	100	105	anti-parallel
Strand 4	C	41	46	anti-parallel
Strand 5	C	53	58	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	212	217	anti-parallel
Strand 4	C	203	207	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	249	254	parallel
Strand 3	C	226	234	anti-parallel
Strand 4	C	173	178	anti-parallel
Strand 5	C	185	190	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	C	249	254	parallel
Strand 3	C	226	234	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	274	281	anti-parallel
Strand 3	C	312	318	anti-parallel
Strand 4	C	300	306	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	291	first strand
Strand 2	C	326	330	anti-parallel
Strand 3	C	337	341	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	10	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	82	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	116	121	parallel
Strand 3	D	96	104	anti-parallel
Strand 4	D	35	41	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	116	121	parallel
Strand 3	D	96	104	anti-parallel
Strand 4	D	109	112	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	198	anti-parallel
Strand 4	D	178	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	135	first strand
Strand 2	D	147	157	anti-parallel
Strand 3	D	188	198	anti-parallel
Strand 4	D	183	185	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	167	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	220	223	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	25	30	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	76	81	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	131	136	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	41	46	anti-parallel
Strand 5	A	53	58	anti-parallel
Strand 6	A	66	68	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	131	136	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	124	125	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	202	206	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	249	253	parallel
Strand 3	A	226	234	anti-parallel
Strand 4	A	173	178	anti-parallel
Strand 5	A	185	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	249	253	parallel
Strand 3	A	226	234	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	273	281	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	273	281	anti-parallel
Strand 3	A	312	319	anti-parallel
Strand 4	A	300	306	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	335	341	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	83	87	anti-parallel
Strand 4	B	71	75	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	116	121	parallel
Strand 3	B	96	103	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	54	anti-parallel
Strand 6	B	60	62	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	116	121	parallel
Strand 3	B	96	103	anti-parallel
Strand 4	B	110	112	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	183	185	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	220	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K0Z