Analysis of interatomic Contacts of Structural Units in PDB entry:
7K1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K1J entry

There are 7 chains in PDB entry 7K1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7MET 4128
B
 LYS 31TYR 534
C
 ASN 6GLU 541
D
 G 1 G 24
E
 A 25 A 37
F
 T 4 G 24
G
 A 25 C 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are218 helices in PDB entry 7K1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
25 42Right-handed alpha
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
81 96Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
125 138Right-handed alpha
Helix 9
AA9
A
148 159Right-handed alpha
Helix 10
AB1
A
170 184Right-handed alpha
Helix 11
AB2
A
191 209Right-handed alpha
Helix 12
AB3
A
216 231Right-handed alpha
Helix 13
AB4
A
243 256Right-handed alpha
Helix 14
AB5
A
266 278Right-handed alpha
Helix 15
AB6
A
289 301Right-handed alpha
Helix 16
AB7
A
308 328Right-handed alpha
Helix 17
AB8
A
336 346Right-handed alpha
Helix 18
AB9
A
356 370Right-handed alpha
Helix 19
AC1
A
379 384Right-handed alpha
Helix 20
AC2
A
385 397Right-handed alpha
Helix 21
AC3
A
409 422Right-handed alpha
Helix 22
AC4
A
431 445Right-handed alpha
Helix 23
AC5
A
452 468Right-handed alpha
Helix 24
AC6
A
472 491Right-handed alpha
Helix 25
AC7
A
527 535Right-handed alpha
Helix 26
AC8
A
560 577Right-handed alpha
Helix 27
AC9
A
616 621Right-handed alpha
Helix 28
AD1
A
625 634Right-handed alpha
Helix 29
AD2
A
642 645Right-handed 310
Helix 30
AD3
A
646 660Right-handed alpha
Helix 31
AD4
A
665 680Right-handed alpha
Helix 32
AD5
A
702 718Right-handed alpha
Helix 33
AD6
A
719 721Right-handed 310
Helix 34
AD7
A
722 734Right-handed alpha
Helix 35
AD8
A
748 752Right-handed 310
Helix 36
AD9
A
762 780Right-handed alpha
Helix 37
AE1
A
792 796Right-handed 310
Helix 38
AE2
A
818 824Right-handed alpha
Helix 39
AE3
A
828 836Right-handed alpha
Helix 40
AE4
A
847 863Right-handed alpha
Helix 41
AE5
A
866 871Right-handed 310
Helix 42
AE6
A
878 883Right-handed alpha
Helix 43
AE7
A
913 918Right-handed alpha
Helix 44
AE8
A
923 945Right-handed alpha
Helix 45
AE9
A
961 974Right-handed alpha
Helix 46
AF1
A
978 983Right-handed alpha
Helix 47
AF2
A
984 996Right-handed alpha
Helix 48
AF3
A
997 1001Right-handed 310
Helix 49
AF4
A
1003 1018Right-handed alpha
Helix 50
AF5
A
1025 1043Right-handed alpha
Helix 51
AF6
A
1055 1067Right-handed alpha
Helix 52
AF7
A
1071 1086Right-handed alpha
Helix 53
AF8
A
1099 1114Right-handed alpha
Helix 54
AF9
A
1118 1122Right-handed 310
Helix 55
AG1
A
1123 1142Right-handed alpha
Helix 56
AG2
A
1165 1175Right-handed alpha
Helix 57
AG3
A
1183 1195Right-handed alpha
Helix 58
AG4
A
1203 1213Right-handed alpha
Helix 59
AG5
A
1221 1226Right-handed alpha
Helix 60
AG6
A
1251 1266Right-handed alpha
Helix 61
AG7
A
1266 1273Right-handed alpha
Helix 62
AG8
A
1278 1283Right-handed alpha
Helix 63
AG9
A
1291 1299Right-handed alpha
Helix 64
AH1
A
1326 1335Right-handed alpha
Helix 65
AH2
A
1336 1350Right-handed alpha
Helix 66
AH3
A
1367 1376Right-handed alpha
Helix 67
AH4
A
1390 1405Right-handed alpha
Helix 68
AH5
A
1411 1420Right-handed alpha
Helix 69
AH6
A
1424 1432Right-handed alpha
Helix 70
AH7
A
1444 1461Right-handed alpha
Helix 71
AH8
A
1477 1490Right-handed alpha
Helix 72
AH9
A
1505 1519Right-handed alpha
Helix 73
AI1
A
1524 1533Right-handed alpha
Helix 74
AI2
A
1556 1563Right-handed alpha
Helix 75
AI3
A
1566 1574Right-handed alpha
Helix 76
AI4
A
1577 1584Right-handed alpha
Helix 77
AI5
A
1589 1607Right-handed alpha
Helix 78
AI6
A
1613 1624Right-handed alpha
Helix 79
AI7
A
1625 1629Right-handed 310
Helix 80
AI8
A
1640 1656Right-handed alpha
Helix 81
AI9
A
1667 1681Right-handed alpha
Helix 82
AJ1
A
1686 1688Right-handed 310
Helix 83
AJ2
A
1689 1694Right-handed alpha
Helix 84
AJ3
A
1706 1722Right-handed alpha
Helix 85
AJ4
A
1735 1753Right-handed alpha
Helix 86
AJ5
A
1757 1767Right-handed alpha
Helix 87
AJ6
A
1774 1787Right-handed alpha
Helix 88
AJ7
A
1790 1807Right-handed alpha
Helix 89
AJ8
A
1812 1823Right-handed alpha
Helix 90
AJ9
A
1824 1830Right-handed alpha
Helix 91
AK1
A
1837 1852Right-handed alpha
Helix 92
AK2
A
1859 1883Right-handed alpha
Helix 93
AK3
A
1886 1891Right-handed alpha
Helix 94
AK4
A
1895 1900Right-handed alpha
Helix 95
AK5
A
1911 1922Right-handed alpha
Helix 96
AK6
A
1936 1953Right-handed alpha
Helix 97
AK7
A
1970 1974Right-handed 310
Helix 98
AK8
A
1977 1982Right-handed alpha
Helix 99
AK9
A
2037 2046Right-handed alpha
Helix 100
AL1
A
2093 2106Right-handed alpha
Helix 101
AL2
A
2126 2134Right-handed alpha
Helix 102
AL3
A
2139 2153Right-handed alpha
Helix 103
AL4
A
2157 2161Right-handed 310
Helix 104
AL5
A
2165 2174Right-handed alpha
Helix 105
AL6
A
2182 2196Right-handed alpha
Helix 106
AL7
A
2205 2222Right-handed alpha
Helix 107
AL8
A
2227 2245Right-handed alpha
Helix 108
AL9
A
2254 2261Right-handed alpha
Helix 109
AM1
A
2270 2283Right-handed alpha
Helix 110
AM2
A
2298 2308Right-handed alpha
Helix 111
AM3
A
2312 2333Right-handed alpha
Helix 112
AM4
A
2340 2356Right-handed alpha
Helix 113
AM5
A
2357 2369Right-handed alpha
Helix 114
AM6
A
2375 2377Right-handed 310
Helix 115
AM7
A
2378 2386Right-handed alpha
Helix 116
AM8
A
2387 2389Right-handed 310
Helix 117
AM9
A
2391 2402Right-handed alpha
Helix 118
AN1
A
2411 2418Right-handed alpha
Helix 119
AN2
A
2419 2424Right-handed alpha
Helix 120
AN3
A
2429 2440Right-handed alpha
Helix 121
AN4
A
2447 2459Right-handed alpha
Helix 122
AN5
A
2466 2483Right-handed alpha
Helix 123
AN6
A
2493 2509Right-handed alpha
Helix 124
AN7
A
2517 2526Right-handed alpha
Helix 125
AN8
A
2536 2542Right-handed alpha
Helix 126
AN9
A
2553 2565Right-handed alpha
Helix 127
AO1
A
2788 2799Right-handed alpha
Helix 128
AO2
A
2801 2820Right-handed alpha
Helix 129
AO3
A
2825 2847Right-handed alpha
Helix 130
AO4
A
2851 2862Right-handed alpha
Helix 131
AO5
A
2872 2881Right-handed alpha
Helix 132
AO6
A
2885 2898Right-handed alpha
Helix 133
AO7
A
2918 2931Right-handed alpha
Helix 134
AO8
A
2935 2941Right-handed alpha
Helix 135
AO9
A
2951 2958Right-handed alpha
Helix 136
AP1
A
2969 2977Right-handed alpha
Helix 137
AP2
A
2992 3004Right-handed alpha
Helix 138
AP3
A
3008 3017Right-handed alpha
Helix 139
AP4
A
3034 3039Right-handed alpha
Helix 140
AP5
A
3040 3053Right-handed alpha
Helix 141
AP6
A
3060 3069Right-handed alpha
Helix 142
AP7
A
3077 3082Right-handed alpha
Helix 143
AP8
A
3083 3092Right-handed alpha
Helix 144
AP9
A
3097 3117Right-handed alpha
Helix 145
AQ1
A
3123 3130Right-handed alpha
Helix 146
AQ2
A
3131 3146Right-handed alpha
Helix 147
AQ3
A
3154 3165Right-handed alpha
Helix 148
AQ4
A
3175 3197Right-handed alpha
Helix 149
AQ5
A
3228 3248Right-handed alpha
Helix 150
AQ6
A
3252 3263Right-handed alpha
Helix 151
AQ7
A
3264 3268Right-handed 310
Helix 152
AQ8
A
3269 3288Right-handed alpha
Helix 153
AQ9
A
3293 3302Right-handed alpha
Helix 154
AR1
A
3304 3308Right-handed 310
Helix 155
AR2
A
3319 3342Right-handed alpha
Helix 156
AR3
A
3352 3362Right-handed alpha
Helix 157
AR4
A
3371 3389Right-handed alpha
Helix 158
AR5
A
3409 3425Right-handed alpha
Helix 159
AR6
A
3442 3455Right-handed alpha
Helix 160
AR7
A
3467 3475Right-handed alpha
Helix 161
AR8
A
3480 3488Right-handed alpha
Helix 162
AR9
A
3515 3525Right-handed alpha
Helix 163
AS1
A
3530 3535Right-handed alpha
Helix 164
AS2
A
3549 3562Right-handed alpha
Helix 165
AS3
A
3567 3577Right-handed alpha
Helix 166
AS4
A
3581 3593Right-handed alpha
Helix 167
AS5
A
3609 3615Right-handed alpha
Helix 168
AS6
A
3621 3627Right-handed alpha
Helix 169
AS7
A
3632 3637Right-handed alpha
Helix 170
AS8
A
3641 3650Right-handed alpha
Helix 171
AS9
A
3651 3654Right-handed 310
Helix 172
AT1
A
3660 3671Right-handed alpha
Helix 173
AT2
A
3680 3684Right-handed 310
Helix 174
AT3
A
3758 3775Right-handed alpha
Helix 175
AT4
A
3778 3783Right-handed alpha
Helix 176
AT5
A
3812 3820Right-handed alpha
Helix 177
AT6
A
3823 3830Right-handed alpha
Helix 178
AT7
A
3834 3847Right-handed alpha
Helix 179
AT8
A
3854 3859Right-handed alpha
Helix 180
AT9
A
3863 3876Right-handed alpha
Helix 181
AU1
A
3882 3892Right-handed alpha
Helix 182
AU2
A
3896 3915Right-handed alpha
Helix 183
AU3
A
3924 3926Right-handed 310
Helix 184
AU4
A
3948 3953Right-handed alpha
Helix 185
AU5
A
3981 3992Right-handed alpha
Helix 186
AU6
A
3996 4006Right-handed alpha
Helix 187
AU7
A
4013 4023Right-handed alpha
Helix 188
AU8
A
4042 4050Right-handed alpha
Helix 189
AU9
A
4057 4066Right-handed alpha
Helix 190
AV1
A
4074 4083Right-handed alpha
Helix 191
AV2
A
4099 4112Right-handed alpha
Helix 192
AV3
A
4113 4118Right-handed alpha
Helix 193
AV4
B
58 78Right-handed alpha
Helix 194
AV5
B
112 120Right-handed alpha
Helix 195
AV6
B
123 135Right-handed alpha
Helix 196
AV7
B
143 155Right-handed alpha
Helix 197
AV8
B
179 197Right-handed alpha
Helix 198
AV9
B
239 244Right-handed alpha
Helix 199
AW1
B
330 337Right-handed alpha
Helix 200
AW2
B
377 392Right-handed alpha
Helix 201
AW3
B
458 469Right-handed alpha
Helix 202
AW4
B
480 495Right-handed alpha
Helix 203
AW5
B
510 519Right-handed alpha
Helix 204
AW6
B
521 527Right-handed alpha
Helix 205
AW7
C
29 48Right-handed alpha
Helix 206
AW8
C
87 96Right-handed alpha
Helix 207
AW9
C
109 122Right-handed alpha
Helix 208
AX1
C
147 158Right-handed alpha
Helix 209
AX2
C
198 217Right-handed alpha
Helix 210
AX3
C
218 222Right-handed 310
Helix 211
AX4
C
227 232Right-handed alpha
Helix 212
AX5
C
325 331Right-handed alpha
Helix 213
AX6
C
352 356Right-handed 310
Helix 214
AX7
C
371 385Right-handed alpha
Helix 215
AX8
C
447 462Right-handed alpha
Helix 216
AX9
C
484 500Right-handed alpha
Helix 217
AY1
C
509 517Right-handed alpha
Helix 218
AY2
C
519 537Right-handed alpha
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There are 11 sheets in PDB entry 7K1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
893 895first strand
Strand 2
A
904 906anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3727 3728first strand
Strand 2
A
3736 3738anti-parallel
Strand 3
A
3750 3754anti-parallel
Strand 4
A
3800 3803anti-parallel
Strand 5
A
3793 3797anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3810 3811first strand
Strand 2
A
3928 3930anti-parallel
Strand 3
A
3937 3939anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
35 43parallel
Strand 4
B
161 169parallel
Strand 5
B
199 202parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 262first strand
Strand 2
B
268 274anti-parallel
Strand 3
B
367 370anti-parallel
Strand 4
B
431 436anti-parallel
Strand 5
B
409 416anti-parallel
Strand 6
B
394 401anti-parallel
Strand 7
B
344 352anti-parallel
Strand 8
B
258 262parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
C
310 316anti-parallel
Strand 3
C
319 321anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 303first strand
Strand 2
C
290 294anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 329first strand
Strand 2
B
316 322anti-parallel
Strand 3
C
277 280anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
52 59anti-parallel
Strand 3
C
8 15parallel
Strand 4
C
131 135parallel
Strand 5
C
160 165parallel
Strand 6
C
224 226parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 251first strand
Strand 2
C
259 268anti-parallel
Strand 3
C
360 364anti-parallel
Strand 4
C
417 423anti-parallel
Strand 5
C
404 412anti-parallel
Strand 6
C
390 396anti-parallel
Strand 7
C
339 346anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
464 466first strand
Strand 2
C
473 475anti-parallel
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