Analysis of interatomic Contacts of Structural Units in PDB entry:
7K28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K28 entry

There are 3 chains in PDB entry 7K28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 326	THR 609
B	ARG 326	THR 609
P	ALA 76	LEU 84

There are no helices in PDB entry 7K28

There are 16 sheets in PDB entry 7K28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	342	345	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	605	609	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	370	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	393	396	anti-parallel
Strand 4	A	403	405	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	383	first strand
Strand 2	A	386	389	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	440	444	anti-parallel
Strand 4	A	449	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	435	436	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	471	478	anti-parallel
Strand 3	A	483	491	anti-parallel
Strand 4	A	496	499	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	518	522	anti-parallel
Strand 3	A	534	538	anti-parallel
Strand 4	A	543	547	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	562	first strand
Strand 2	A	565	569	anti-parallel
Strand 3	A	580	585	anti-parallel
Strand 4	A	590	596	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	354	first strand
Strand 2	B	342	346	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	605	609	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	370	first strand
Strand 2	B	373	377	anti-parallel
Strand 3	B	393	396	anti-parallel
Strand 4	B	403	405	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	383	first strand
Strand 2	B	386	389	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	440	444	anti-parallel
Strand 4	B	449	453	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	435	436	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	471	478	anti-parallel
Strand 3	B	483	491	anti-parallel
Strand 4	B	496	499	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	518	522	anti-parallel
Strand 3	B	534	538	anti-parallel
Strand 4	B	543	546	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	562	first strand
Strand 2	B	565	569	anti-parallel
Strand 3	B	580	585	anti-parallel
Strand 4	B	590	596	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K28

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K28