Analysis of interatomic Contacts of Structural Units in PDB entry:
7K3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K3M entry

There are 2 chains in PDB entry 7K3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 23PHE 70
A
 ILE 72LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7K3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 35Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
66 69Right-handed 310
Helix 4
AA4
A
70 81Right-handed alpha
Helix 5
AA5
A
100 104Right-handed 310
Helix 6
AA6
A
109 116Right-handed alpha
Helix 7
AA7
A
117 129Right-handed alpha
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
162 175Right-handed alpha
Helix 10
AB1
A
181 192Right-handed alpha
Helix 11
AB2
A
244 260Right-handed alpha
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There are 2 sheets in PDB entry 7K3M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
52 55parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
228 238anti-parallel
Strand 5
A
214 225anti-parallel
Strand 6
A
200 211anti-parallel
Strand 7
A
193 197anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
107 108anti-parallel
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