Analysis of interatomic Contacts of Structural Units in PDB entry:
7K47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K47 entry

There is 1 chain in PDB entry 7K47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LYS 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7K47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
33 44Right-handed alpha
Helix 4
AA4
A
57 65Right-handed alpha
Helix 5
AA5
A
81 90Right-handed alpha
Helix 6
AA6
A
91 93Right-handed 310
Helix 7
AA7
A
110 119Right-handed alpha
Helix 8
AA8
A
144 146Right-handed 310
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
176 186Right-handed alpha
Helix 11
AB2
A
196 198Right-handed 310
Helix 12
AB3
A
199 207Right-handed alpha
Helix 13
AB4
A
218 223Right-handed 310
Helix 14
AB5
A
227 249Right-handed alpha
Helix 15
AB6
A
255 257Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 7K47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
49 54parallel
Strand 3
A
5 11parallel
Strand 4
A
98 103parallel
Strand 5
A
166 175anti-parallel
Strand 6
A
138 143anti-parallel
Strand 7
A
147 152anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
49 54parallel
Strand 3
A
5 11parallel
Strand 4
A
98 103parallel
Strand 5
A
166 175anti-parallel
Strand 6
A
124 130anti-parallel
Strand 7
A
212 215parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
277 285parallel
Strand 3
A
264 267parallel
Strand 4
A
277 285parallel
Strand 5
A
295 302parallel
Strand 6
A
312 319parallel
Strand 7
A
329 331parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
272 273parallel
Strand 3
A
290 291parallel
Strand 4
A
307 308parallel
Strand 5
A
324 325parallel
Strand 6
A
342 354parallel
Strand 7
A
329 331parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 319first strand
Strand 2
A
335 337parallel
Strand 3
A
342 354parallel
Strand 4
A
359 371parallel
Strand 5
A
376 377parallel
Strand 6
A
401 402parallel
Strand 7
A
419 420parallel
Strand 8
A
435 436parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 371first strand
Strand 2
A
394 396parallel
Strand 3
A
412 414parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
407 409parallel
Strand 3
A
425 426parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il