Analysis of interatomic Contacts of Structural Units in PDB entry:
7K5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K5W entry

There is 1 chain in PDB entry 7K5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7K5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed 310
Helix 2
AA2
A
15 34Right-handed alpha
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
104 124Right-handed alpha
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
147 165Right-handed alpha
Helix 7
AA7
A
176 187Right-handed alpha
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
259 261Right-handed 310
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There are 5 sheets in PDB entry 7K5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
225 229parallel
Strand 3
A
244 257anti-parallel
Strand 4
A
79 88anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
225 229parallel
Strand 3
A
244 257anti-parallel
Strand 4
A
234 240anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 60first strand
Strand 2
A
71 77anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
131 132anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
263 266parallel
Strand 3
A
215 219anti-parallel
Strand 4
A
171 175anti-parallel
Strand 5
A
205 208parallel
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