Analysis of interatomic Contacts of Structural Units in PDB entry:
7K6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7K6C entry

There are 7 chains in PDB entry 7K6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	VAL 161
B	GLY 3	ASP 162
C	GLY 3	VAL 161
D	THR 4	ASP 162
E	GLY 3	VAL 161
F	GLY 3	VAL 161
G	GLY 3	ASP 162

There are 42 helices in PDB entry 7K6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	39	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	84	91	Right-handed alpha
Helix 5	AA5	A	101	109	Right-handed alpha
Helix 6	AA6	A	110	112	Right-handed 310
Helix 7	AA7	B	27	39	Right-handed alpha
Helix 8	AA8	B	47	53	Right-handed alpha
Helix 9	AA9	B	54	58	Right-handed 310
Helix 10	AB1	B	84	91	Right-handed alpha
Helix 11	AB2	B	101	109	Right-handed alpha
Helix 12	AB3	B	110	112	Right-handed 310
Helix 13	AB4	C	27	39	Right-handed alpha
Helix 14	AB5	C	47	53	Right-handed alpha
Helix 15	AB6	C	54	58	Right-handed 310
Helix 16	AB7	C	84	91	Right-handed alpha
Helix 17	AB8	C	101	109	Right-handed alpha
Helix 18	AB9	C	110	112	Right-handed 310
Helix 19	AC1	D	27	39	Right-handed alpha
Helix 20	AC2	D	47	53	Right-handed alpha
Helix 21	AC3	D	54	58	Right-handed 310
Helix 22	AC4	D	84	91	Right-handed alpha
Helix 23	AC5	D	101	109	Right-handed alpha
Helix 24	AC6	D	110	112	Right-handed 310
Helix 25	AC7	E	27	39	Right-handed alpha
Helix 26	AC8	E	47	53	Right-handed alpha
Helix 27	AC9	E	54	58	Right-handed 310
Helix 28	AD1	E	84	91	Right-handed alpha
Helix 29	AD2	E	101	109	Right-handed alpha
Helix 30	AD3	E	110	112	Right-handed 310
Helix 31	AD4	F	27	39	Right-handed alpha
Helix 32	AD5	F	47	53	Right-handed alpha
Helix 33	AD6	F	54	58	Right-handed 310
Helix 34	AD7	F	84	91	Right-handed alpha
Helix 35	AD8	F	101	109	Right-handed alpha
Helix 36	AD9	F	110	112	Right-handed 310
Helix 37	AE1	G	27	39	Right-handed alpha
Helix 38	AE2	G	47	53	Right-handed alpha
Helix 39	AE3	G	54	58	Right-handed 310
Helix 40	AE4	G	84	91	Right-handed alpha
Helix 41	AE5	G	101	109	Right-handed alpha
Helix 42	AE6	G	110	112	Right-handed 310

There are 21 sheets in PDB entry 7K6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	65	68	parallel
Strand 3	A	43	46	parallel
Strand 4	A	97	98	parallel
Strand 5	A	6	12	parallel
Strand 6	A	114	120	parallel
Strand 7	A	152	160	anti-parallel
Strand 8	A	137	138	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	65	68	parallel
Strand 3	A	43	46	parallel
Strand 4	A	97	98	parallel
Strand 5	A	6	12	parallel
Strand 6	A	114	120	parallel
Strand 7	A	152	160	anti-parallel
Strand 8	A	145	146	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	128	129	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	65	68	parallel
Strand 3	B	43	46	parallel
Strand 4	B	97	98	parallel
Strand 5	B	6	12	parallel
Strand 6	B	114	120	parallel
Strand 7	B	152	160	anti-parallel
Strand 8	B	137	138	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	65	68	parallel
Strand 3	B	43	46	parallel
Strand 4	B	97	98	parallel
Strand 5	B	6	12	parallel
Strand 6	B	114	120	parallel
Strand 7	B	152	160	anti-parallel
Strand 8	B	145	146	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	128	129	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	65	68	parallel
Strand 3	C	43	46	parallel
Strand 4	C	97	98	parallel
Strand 5	C	6	12	parallel
Strand 6	C	114	120	parallel
Strand 7	C	152	160	anti-parallel
Strand 8	C	137	139	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	65	68	parallel
Strand 3	C	43	46	parallel
Strand 4	C	97	98	parallel
Strand 5	C	6	12	parallel
Strand 6	C	114	120	parallel
Strand 7	C	152	160	anti-parallel
Strand 8	C	145	146	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	128	129	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	82	first strand
Strand 2	D	65	68	parallel
Strand 3	D	43	46	parallel
Strand 4	D	97	98	parallel
Strand 5	D	6	12	parallel
Strand 6	D	114	120	parallel
Strand 7	D	152	160	anti-parallel
Strand 8	D	137	139	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	82	first strand
Strand 2	D	65	68	parallel
Strand 3	D	43	46	parallel
Strand 4	D	97	98	parallel
Strand 5	D	6	12	parallel
Strand 6	D	114	120	parallel
Strand 7	D	152	160	anti-parallel
Strand 8	D	145	146	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	128	129	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	82	first strand
Strand 2	E	65	68	parallel
Strand 3	E	43	46	parallel
Strand 4	E	97	98	parallel
Strand 5	E	6	12	parallel
Strand 6	E	114	120	parallel
Strand 7	E	152	160	anti-parallel
Strand 8	E	137	139	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	82	first strand
Strand 2	E	65	68	parallel
Strand 3	E	43	46	parallel
Strand 4	E	97	98	parallel
Strand 5	E	6	12	parallel
Strand 6	E	114	120	parallel
Strand 7	E	152	160	anti-parallel
Strand 8	E	145	146	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	128	129	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	82	first strand
Strand 2	F	65	68	parallel
Strand 3	F	43	46	parallel
Strand 4	F	97	98	parallel
Strand 5	F	6	12	parallel
Strand 6	F	114	120	parallel
Strand 7	F	152	160	anti-parallel
Strand 8	F	137	141	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	82	first strand
Strand 2	F	65	68	parallel
Strand 3	F	43	46	parallel
Strand 4	F	97	98	parallel
Strand 5	F	6	12	parallel
Strand 6	F	114	120	parallel
Strand 7	F	152	160	anti-parallel
Strand 8	F	145	146	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	128	129	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	82	first strand
Strand 2	G	65	68	parallel
Strand 3	G	43	46	parallel
Strand 4	G	97	98	parallel
Strand 5	G	6	12	parallel
Strand 6	G	114	120	parallel
Strand 7	G	152	160	anti-parallel
Strand 8	G	137	140	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	82	first strand
Strand 2	G	65	68	parallel
Strand 3	G	43	46	parallel
Strand 4	G	97	98	parallel
Strand 5	G	6	12	parallel
Strand 6	G	114	120	parallel
Strand 7	G	152	160	anti-parallel
Strand 8	G	145	146	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	128	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7K6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
7K6C