Analysis of interatomic Contacts of Structural Units in PDB entry:
7K6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K6Y entry

There are 2 chains in PDB entry 7K6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 50GLY 327
B
 VAL 52GLY 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7K6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 93Right-handed 310
Helix 2
AA2
A
102 111Right-handed alpha
Helix 3
AA3
A
139 143Right-handed 310
Helix 4
AA4
A
149 165Right-handed alpha
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
193 201Right-handed alpha
Helix 7
AA7
A
217 231Right-handed alpha
Helix 8
AA8
A
245 261Right-handed alpha
Helix 9
AA9
A
265 277Right-handed alpha
Helix 10
AB1
A
289 313Right-handed alpha
Helix 11
AB2
A
314 317Right-handed 310
Helix 12
AB3
A
320 327Right-handed alpha
Helix 13
AB4
B
90 93Right-handed 310
Helix 14
AB5
B
102 111Right-handed alpha
Helix 15
AB6
B
139 143Right-handed 310
Helix 16
AB7
B
149 165Right-handed alpha
Helix 17
AB8
B
175 179Right-handed 310
Helix 18
AB9
B
193 201Right-handed alpha
Helix 19
AC1
B
217 231Right-handed alpha
Helix 20
AC2
B
245 261Right-handed alpha
Helix 21
AC3
B
265 277Right-handed alpha
Helix 22
AC4
B
289 313Right-handed alpha
Helix 23
AC5
B
314 317Right-handed 310
Helix 24
AC6
B
320 327Right-handed alpha
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There are 6 sheets in PDB entry 7K6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
127 130anti-parallel
Strand 4
A
191 192anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
95 98anti-parallel
Strand 3
A
236 240parallel
Strand 4
A
117 123parallel
Strand 5
A
204 210parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
184 186anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
133 138anti-parallel
Strand 3
B
127 130anti-parallel
Strand 4
B
191 192anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
95 98anti-parallel
Strand 3
B
236 240parallel
Strand 4
B
117 123parallel
Strand 5
B
204 210parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
184 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il