Analysis of interatomic Contacts of Structural Units in PDB entry:
7K79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K79 entry

There are 4 chains in PDB entry 7K79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 SER 3ILE 478
L
 SER 54SER 608
O
 SER 53SER 608
N
 SER 4GLU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 7K79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
13 24Right-handed alpha
Helix 2
AA2
K
61 66Right-handed alpha
Helix 3
AA3
K
69 74Right-handed alpha
Helix 4
AA4
K
85 91Right-handed alpha
Helix 5
AA5
K
97 107Right-handed alpha
Helix 6
AA6
K
143 151Right-handed alpha
Helix 7
AA7
K
176 185Right-handed alpha
Helix 8
AA8
K
192 196Right-handed 310
Helix 9
AA9
K
257 266Right-handed alpha
Helix 10
AB1
K
280 288Right-handed alpha
Helix 11
AB2
K
304 308Right-handed 310
Helix 12
AB3
K
346 350Right-handed 310
Helix 13
AB4
K
368 371Right-handed 310
Helix 14
AB5
K
372 380Right-handed alpha
Helix 15
AB6
K
383 390Right-handed alpha
Helix 16
AB7
K
398 402Right-handed 310
Helix 17
AB8
K
423 434Right-handed alpha
Helix 18
AB9
K
455 460Right-handed alpha
Helix 19
AC1
L
58 72Right-handed alpha
Helix 20
AC2
L
97 106Right-handed alpha
Helix 21
AC3
L
107 122Right-handed alpha
Helix 22
AC4
L
133 145Right-handed alpha
Helix 23
AC5
L
153 173Right-handed alpha
Helix 24
AC6
L
175 181Right-handed alpha
Helix 25
AC7
L
185 190Right-handed alpha
Helix 26
AC8
L
203 224Right-handed alpha
Helix 27
AC9
L
230 241Right-handed alpha
Helix 28
AD1
L
244 249Right-handed alpha
Helix 29
AD2
L
249 266Right-handed alpha
Helix 30
AD3
L
279 302Right-handed alpha
Helix 31
AD4
L
343 357Right-handed alpha
Helix 32
AD5
L
358 360Right-handed 310
Helix 33
AD6
L
366 384Right-handed alpha
Helix 34
AD7
L
393 422Right-handed alpha
Helix 35
AD8
L
428 445Right-handed alpha
Helix 36
AD9
L
451 456Right-handed 310
Helix 37
AE1
L
458 477Right-handed alpha
Helix 38
AE2
L
481 494Right-handed alpha
Helix 39
AE3
L
501 522Right-handed alpha
Helix 40
AE4
L
536 552Right-handed alpha
Helix 41
AE5
L
554 562Right-handed alpha
Helix 42
AE6
L
590 601Right-handed alpha
Helix 43
AE7
O
56 73Right-handed alpha
Helix 44
AE8
O
98 103Right-handed alpha
Helix 45
AE9
O
107 118Right-handed alpha
Helix 46
AF1
O
125 129Right-handed 310
Helix 47
AF2
O
133 147Right-handed alpha
Helix 48
AF3
O
154 171Right-handed alpha
Helix 49
AF4
O
172 174Right-handed 310
Helix 50
AF5
O
175 182Right-handed alpha
Helix 51
AF6
O
203 224Right-handed alpha
Helix 52
AF7
O
230 232Right-handed 310
Helix 53
AF8
O
233 241Right-handed alpha
Helix 54
AF9
O
244 249Right-handed alpha
Helix 55
AG1
O
249 266Right-handed alpha
Helix 56
AG2
O
279 304Right-handed alpha
Helix 57
AG3
O
340 344Right-handed 310
Helix 58
AG4
O
346 357Right-handed alpha
Helix 59
AG5
O
366 386Right-handed alpha
Helix 60
AG6
O
393 422Right-handed alpha
Helix 61
AG7
O
426 435Right-handed alpha
Helix 62
AG8
O
435 445Right-handed alpha
Helix 63
AG9
O
451 456Right-handed 310
Helix 64
AH1
O
458 475Right-handed alpha
Helix 65
AH2
O
481 494Right-handed alpha
Helix 66
AH3
O
497 500Right-handed 310
Helix 67
AH4
O
501 524Right-handed alpha
Helix 68
AH5
O
535 552Right-handed alpha
Helix 69
AH6
O
554 563Right-handed alpha
Helix 70
AH7
O
602 606Right-handed 310
Helix 71
AH8
N
22 25Right-handed 310
Helix 72
AH9
N
26 31Right-handed alpha
Helix 73
AI1
N
83 97Right-handed alpha
Helix 74
AI2
N
121 125Right-handed 310
Helix 75
AI3
N
128 142Right-handed alpha
Helix 76
AI4
N
143 157Right-handed alpha
Helix 77
AI5
N
177 187Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7K79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
131 132first strand
Strand 2
K
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
199 201first strand
Strand 2
K
275 278parallel
Strand 3
K
311 314parallel
Strand 4
K
336 339parallel
Strand 5
K
358 360parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
410 412first strand
Strand 2
K
475 477parallel
Strand 3
K
453 454parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
527 528first strand
Strand 2
L
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
527 528first strand
Strand 2
O
533 534anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il