Analysis of interatomic Contacts of Structural Units in PDB entry:
7K84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K84 entry

There are 2 chains in PDB entry 7K84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 831
B
 VAL 2SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7K84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 56Right-handed 310
Helix 2
AA2
A
76 97Right-handed alpha
Helix 3
AA3
A
97 109Right-handed alpha
Helix 4
AA4
A
167 171Right-handed 310
Helix 5
AA5
A
172 176Right-handed 310
Helix 6
AA6
A
205 222Right-handed alpha
Helix 7
AA7
A
224 229Right-handed alpha
Helix 8
AA8
A
249 256Right-handed alpha
Helix 9
AA9
A
257 263Right-handed 310
Helix 10
AB1
A
264 288Right-handed alpha
Helix 11
AB2
A
293 295Right-handed 310
Helix 12
AB3
A
296 307Right-handed alpha
Helix 13
AB4
A
320 334Right-handed alpha
Helix 14
AB5
A
335 343Right-handed alpha
Helix 15
AB6
A
377 388Right-handed 310
Helix 16
AB7
A
392 394Right-handed 310
Helix 17
AB8
A
432 434Right-handed 310
Helix 18
AB9
A
439 443Right-handed 310
Helix 19
AC1
A
445 450Right-handed 310
Helix 20
AC2
A
518 525Right-handed alpha
Helix 21
AC3
A
540 547Right-handed alpha
Helix 22
AC4
A
556 565Right-handed alpha
Helix 23
AC5
A
568 570Right-handed 310
Helix 24
AC6
A
571 588Right-handed alpha
Helix 25
AC7
A
605 611Right-handed alpha
Helix 26
AC8
A
620 629Right-handed alpha
Helix 27
AC9
A
630 634Right-handed 310
Helix 28
AD1
A
659 693Right-handed alpha
Helix 29
AD2
A
693 725Right-handed alpha
Helix 30
AD3
A
727 735Right-handed alpha
Helix 31
AD4
A
739 780Right-handed alpha
Helix 32
AD5
A
780 800Right-handed alpha
Helix 33
AD6
A
800 805Right-handed alpha
Helix 34
AD7
A
807 821Right-handed alpha
Helix 35
AD8
A
826 830Right-handed 310
Helix 36
AD9
B
84 88Right-handed 310
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There are 13 sheets in PDB entry 7K84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
20 22anti-parallel
Strand 3
A
132 135anti-parallel
Strand 4
A
141 144anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
148 152parallel
Strand 4
A
182 185parallel
Strand 5
A
162 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
505 506anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
404 406anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
396 397anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
247 248anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
317 319anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 430first strand
Strand 2
A
408 416anti-parallel
Strand 3
A
510 513parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 454first strand
Strand 2
A
649 650parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 538first strand
Strand 2
A
550 552parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
65 70anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
31 36anti-parallel
Strand 5
B
43 48anti-parallel
Strand 6
B
55 57anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
112 113anti-parallel
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