Analysis of interatomic Contacts of Structural Units in PDB entry:
7K86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K86 entry

There are 2 chains in PDB entry 7K86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 465
B
 MET 1VAL 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 7K86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 33Right-handed alpha
Helix 2
AA2
A
50 65Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
101 108Right-handed alpha
Helix 5
AA5
A
165 167Right-handed 310
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
202 205Right-handed 310
Helix 8
AA8
A
206 218Right-handed alpha
Helix 9
AA9
A
246 253Right-handed alpha
Helix 10
AB1
A
256 269Right-handed alpha
Helix 11
AB2
A
278 286Right-handed alpha
Helix 12
AB3
A
287 291Right-handed 310
Helix 13
AB4
A
299 314Right-handed alpha
Helix 14
AB5
A
315 330Right-handed alpha
Helix 15
AB6
A
339 348Right-handed alpha
Helix 16
AB7
A
353 362Right-handed alpha
Helix 17
AB8
A
363 365Right-handed 310
Helix 18
AB9
A
372 380Right-handed alpha
Helix 19
AC1
A
383 397Right-handed alpha
Helix 20
AC2
A
402 418Right-handed alpha
Helix 21
AC3
A
420 434Right-handed alpha
Helix 22
AC4
A
440 464Right-handed alpha
Helix 23
AC5
B
16 33Right-handed alpha
Helix 24
AC6
B
50 64Right-handed alpha
Helix 25
AC7
B
78 92Right-handed alpha
Helix 26
AC8
B
101 115Right-handed alpha
Helix 27
AC9
B
165 167Right-handed 310
Helix 28
AD1
B
180 192Right-handed alpha
Helix 29
AD2
B
202 205Right-handed 310
Helix 30
AD3
B
206 218Right-handed alpha
Helix 31
AD4
B
246 254Right-handed alpha
Helix 32
AD5
B
256 269Right-handed alpha
Helix 33
AD6
B
278 286Right-handed alpha
Helix 34
AD7
B
287 291Right-handed 310
Helix 35
AD8
B
299 314Right-handed alpha
Helix 36
AD9
B
315 330Right-handed alpha
Helix 37
AE1
B
339 348Right-handed alpha
Helix 38
AE2
B
353 362Right-handed alpha
Helix 39
AE3
B
363 365Right-handed 310
Helix 40
AE4
B
372 380Right-handed alpha
Helix 41
AE5
B
383 398Right-handed alpha
Helix 42
AE6
B
402 418Right-handed alpha
Helix 43
AE7
B
420 434Right-handed alpha
Helix 44
AE8
B
440 449Right-handed alpha
Helix 45
AE9
B
449 464Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7K86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
36 41parallel
Strand 3
A
70 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
158 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
223 227parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
36 41parallel
Strand 3
B
70 74parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
171 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 154first strand
Strand 2
B
158 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
223 227parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il