Analysis of interatomic Contacts of Structural Units in PDB entry:
7K8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K8C entry

There is 1 chain in PDB entry 7K8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7K8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
14 32Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
85 101Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
143 165Right-handed alpha
Helix 8
AA8
A
170 205Right-handed alpha
Helix 9
AA9
A
207 234Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
245 272Right-handed alpha
Helix 12
AB3
A
274 302Right-handed alpha
Helix 13
AB4
A
303 307Right-handed 310
Helix 14
AB5
A
309 342Right-handed alpha
Helix 15
AB6
A
383 400Right-handed alpha
Helix 16
AB7
A
404 420Right-handed alpha
Helix 17
AB8
A
428 432Right-handed 310
Helix 18
AB9
A
436 449Right-handed alpha
Helix 19
AC1
A
470 483Right-handed alpha
Helix 20
AC2
A
525 536Right-handed alpha
Helix 21
AC3
A
548 583Right-handed alpha
Helix 22
AC4
A
586 614Right-handed alpha
Helix 23
AC5
A
616 621Right-handed alpha
Helix 24
AC6
A
628 661Right-handed alpha
Helix 25
AC7
A
663 695Right-handed alpha
Helix 26
AC8
A
698 722Right-handed alpha
Helix 27
AC9
A
722 728Right-handed alpha
Helix 28
AD1
A
729 731Right-handed 310
Helix 29
AD2
A
732 737Right-handed alpha
Helix 30
AD3
A
739 748Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7K8C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
166 169anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
513 517anti-parallel
Strand 3
A
458 463anti-parallel
Strand 4
A
542 547anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il