Analysis of interatomic Contacts of Structural Units in PDB entry:
7K8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K8D entry

There is 1 chain in PDB entry 7K8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7K8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
12 34Right-handed alpha
Helix 3
AA3
A
47 62Right-handed alpha
Helix 4
AA4
A
83 101Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
143 160Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
170 205Right-handed alpha
Helix 10
AB1
A
207 233Right-handed alpha
Helix 11
AB2
A
241 272Right-handed alpha
Helix 12
AB3
A
274 307Right-handed alpha
Helix 13
AB4
A
310 332Right-handed alpha
Helix 14
AB5
A
332 342Right-handed alpha
Helix 15
AB6
A
343 347Right-handed 310
Helix 16
AB7
A
383 400Right-handed alpha
Helix 17
AB8
A
401 416Right-handed alpha
Helix 18
AB9
A
418 422Right-handed 310
Helix 19
AC1
A
428 432Right-handed 310
Helix 20
AC2
A
436 449Right-handed alpha
Helix 21
AC3
A
470 483Right-handed alpha
Helix 22
AC4
A
493 497Right-handed 310
Helix 23
AC5
A
524 535Right-handed alpha
Helix 24
AC6
A
548 583Right-handed alpha
Helix 25
AC7
A
586 612Right-handed alpha
Helix 26
AC8
A
616 621Right-handed alpha
Helix 27
AC9
A
628 660Right-handed alpha
Helix 28
AD1
A
663 675Right-handed alpha
Helix 29
AD2
A
675 695Right-handed alpha
Helix 30
AD3
A
698 718Right-handed alpha
Helix 31
AD4
A
718 732Right-handed alpha
Helix 32
AD5
A
733 737Right-handed 310
Helix 33
AD6
A
739 748Right-handed alpha
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There are 2 sheets in PDB entry 7K8D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
133 136anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 518first strand
Strand 2
A
457 463anti-parallel
Strand 3
A
542 547anti-parallel
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