Analysis of interatomic Contacts of Structural Units in PDB entry:
7K8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K8K entry

There are 4 chains in PDB entry 7K8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29ALA 293
B
 ASP 29ALA 293
C
 ASP 29ALA 293
D
 ASP 29ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 7K8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 42Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
72 83Right-handed alpha
Helix 4
AA4
A
87 90Right-handed 310
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
117 127Right-handed alpha
Helix 7
AA7
A
129 139Right-handed alpha
Helix 8
AA8
A
142 158Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
184 197Right-handed alpha
Helix 11
AB2
A
202 215Right-handed alpha
Helix 12
AB3
A
223 227Right-handed 310
Helix 13
AB4
A
267 271Right-handed 310
Helix 14
AB5
A
278 293Right-handed alpha
Helix 15
AB6
B
30 42Right-handed alpha
Helix 16
AB7
B
69 71Right-handed 310
Helix 17
AB8
B
72 84Right-handed alpha
Helix 18
AB9
B
85 90Right-handed 310
Helix 19
AC1
B
96 100Right-handed 310
Helix 20
AC2
B
106 110Right-handed 310
Helix 21
AC3
B
117 127Right-handed alpha
Helix 22
AC4
B
129 141Right-handed alpha
Helix 23
AC5
B
142 157Right-handed alpha
Helix 24
AC6
B
169 173Right-handed 310
Helix 25
AC7
B
184 197Right-handed alpha
Helix 26
AC8
B
202 214Right-handed alpha
Helix 27
AC9
B
222 227Right-handed alpha
Helix 28
AD1
B
267 271Right-handed 310
Helix 29
AD2
B
278 293Right-handed alpha
Helix 30
AD3
C
30 42Right-handed alpha
Helix 31
AD4
C
69 71Right-handed 310
Helix 32
AD5
C
72 84Right-handed alpha
Helix 33
AD6
C
87 90Right-handed 310
Helix 34
AD7
C
96 100Right-handed 310
Helix 35
AD8
C
117 127Right-handed alpha
Helix 36
AD9
C
129 141Right-handed alpha
Helix 37
AE1
C
142 156Right-handed alpha
Helix 38
AE2
C
169 173Right-handed 310
Helix 39
AE3
C
184 197Right-handed alpha
Helix 40
AE4
C
202 214Right-handed alpha
Helix 41
AE5
C
222 227Right-handed alpha
Helix 42
AE6
C
267 271Right-handed 310
Helix 43
AE7
C
277 293Right-handed alpha
Helix 44
AE8
D
30 42Right-handed alpha
Helix 45
AE9
D
69 71Right-handed 310
Helix 46
AF1
D
72 84Right-handed alpha
Helix 47
AF2
D
107 111Right-handed 310
Helix 48
AF3
D
117 127Right-handed alpha
Helix 49
AF4
D
129 141Right-handed alpha
Helix 50
AF5
D
143 145Right-handed 310
Helix 51
AF6
D
146 157Right-handed alpha
Helix 52
AF7
D
184 197Right-handed alpha
Helix 53
AF8
D
202 214Right-handed alpha
Helix 54
AF9
D
222 227Right-handed alpha
Helix 55
AG1
D
267 271Right-handed 310
Helix 56
AG2
D
277 293Right-handed alpha
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There are 12 sheets in PDB entry 7K8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
232 239anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
115 116anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
258 266anti-parallel
Strand 4
B
245 252anti-parallel
Strand 5
B
232 239anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
182 183anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
115 116anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
44 49anti-parallel
Strand 3
C
258 266anti-parallel
Strand 4
C
245 252anti-parallel
Strand 5
C
232 239anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
182 183anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
115 116anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 60first strand
Strand 2
D
44 48anti-parallel
Strand 3
D
258 266anti-parallel
Strand 4
D
245 252anti-parallel
Strand 5
D
232 239anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
182 183anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 93first strand
Strand 2
D
115 116anti-parallel
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