Analysis of interatomic Contacts of Structural Units in PDB entry:
7K9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7K9V entry

There are 2 chains in PDB entry 7K9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7GLU 214
B
 GLN 9THR 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7K9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
28 52Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
116 121Right-handed 310
Helix 7
AA7
A
122 129Right-handed 310
Helix 8
AA8
A
179 185Right-handed 310
Helix 9
AA9
A
186 198Right-handed alpha
Helix 10
AB1
B
10 24Right-handed alpha
Helix 11
AB2
B
28 52Right-handed alpha
Helix 12
AB3
B
53 57Right-handed 310
Helix 13
AB4
B
85 94Right-handed alpha
Helix 14
AB5
B
94 111Right-handed alpha
Helix 15
AB6
B
116 121Right-handed 310
Helix 16
AB7
B
122 129Right-handed 310
Helix 17
AB8
B
179 185Right-handed 310
Helix 18
AB9
B
186 198Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 7K9V.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
131 139anti-parallel
Strand 4
A
170 177anti-parallel
Strand 5
A
74 79anti-parallel
Strand 6
A
64 69anti-parallel
Strand 7
A
205 210parallel
Strand 8
B
205 210anti-parallel
Strand 9
B
64 69parallel
Strand 10
B
74 79anti-parallel
Strand 11
B
170 177anti-parallel
Strand 12
B
131 139anti-parallel
Strand 13
B
145 150anti-parallel
Strand 14
B
159 160anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il