Analysis of interatomic Contacts of Structural Units in PDB entry:
7KAK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KAK entry

There are 6 chains in PDB entry 7KAK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 9	ASP 466
C	PRO 12	ALA 68
B	LEU 92	PHE 123
D	GLU 5	ASP 625
E	TRP 3	ARG 180
F	THR 7	ILE 204

There are 54 helices in PDB entry 7KAK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	48	Right-handed alpha
Helix 2	AA2	A	63	65	Right-handed 310
Helix 3	AA3	A	66	71	Right-handed alpha
Helix 4	AA4	A	82	99	Right-handed alpha
Helix 5	AA5	A	107	136	Right-handed alpha
Helix 6	AA6	A	141	146	Right-handed alpha
Helix 7	AA7	A	148	174	Right-handed alpha
Helix 8	AA8	A	179	196	Right-handed alpha
Helix 9	AA9	A	213	225	Right-handed alpha
Helix 10	AB1	A	227	236	Right-handed alpha
Helix 11	AB2	A	243	262	Right-handed alpha
Helix 12	AB3	A	290	314	Right-handed alpha
Helix 13	AB4	A	317	324	Right-handed alpha
Helix 14	AB5	A	340	346	Right-handed alpha
Helix 15	AB6	A	350	357	Right-handed alpha
Helix 16	AB7	A	357	383	Right-handed alpha
Helix 17	AB8	A	386	398	Right-handed alpha
Helix 18	AB9	A	408	439	Right-handed alpha
Helix 19	AC1	A	443	463	Right-handed alpha
Helix 20	AC2	C	13	26	Right-handed alpha
Helix 21	AC3	C	30	68	Right-handed alpha
Helix 22	AC4	B	95	123	Right-handed alpha
Helix 23	AC5	D	14	33	Right-handed alpha
Helix 24	AC6	D	56	68	Right-handed alpha
Helix 25	AC7	D	73	97	Right-handed alpha
Helix 26	AC8	D	193	197	Right-handed 310
Helix 27	AC9	D	201	228	Right-handed alpha
Helix 28	AD1	D	237	247	Right-handed alpha
Helix 29	AD2	D	254	262	Right-handed alpha
Helix 30	AD3	D	265	271	Right-handed alpha
Helix 31	AD4	D	279	291	Right-handed alpha
Helix 32	AD5	D	298	306	Right-handed alpha
Helix 33	AD6	D	308	323	Right-handed alpha
Helix 34	AD7	D	332	357	Right-handed alpha
Helix 35	AD8	D	360	375	Right-handed alpha
Helix 36	AD9	D	382	387	Right-handed 310
Helix 37	AE1	D	391	399	Right-handed alpha
Helix 38	AE2	D	408	414	Right-handed alpha
Helix 39	AE3	D	418	423	Right-handed alpha
Helix 40	AE4	D	431	443	Right-handed alpha
Helix 41	AE5	E	4	36	Right-handed alpha
Helix 42	AE6	E	46	60	Right-handed alpha
Helix 43	AE7	E	71	104	Right-handed alpha
Helix 44	AE8	E	110	138	Right-handed alpha
Helix 45	AE9	E	142	167	Right-handed alpha
Helix 46	AF1	E	168	180	Right-handed alpha
Helix 47	AF2	F	31	56	Right-handed alpha
Helix 48	AF3	F	68	87	Right-handed alpha
Helix 49	AF4	F	91	107	Right-handed alpha
Helix 50	AF5	F	113	135	Right-handed alpha
Helix 51	AF6	F	137	152	Right-handed alpha
Helix 52	AF7	F	157	171	Right-handed alpha
Helix 53	AF8	F	172	187	Right-handed alpha
Helix 54	AF9	F	192	203	Right-handed alpha

There are 7 sheets in PDB entry 7KAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	B	93	94	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	D	187	190	anti-parallel
Strand 4	D	7	8	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	399	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	336	338	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	457	first strand
Strand 2	D	468	477	anti-parallel
Strand 3	D	586	591	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	565	first strand
Strand 2	D	546	551	anti-parallel
Strand 3	D	600	604	anti-parallel
Strand 4	D	616	620	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	22	24	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KAK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KAK