Analysis of interatomic Contacts of Structural Units in PDB entry:
7KB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KB5 entry

There are 6 chains in PDB entry 7KB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 12	GLY 467
B	ARG 51	PHE 82
C	VAL 26	VAL 80
D	PHE 54	ASP 612
E	ASN 69	ASN 206
F	THR 3	GLY 192

There are 52 helices in PDB entry 7KB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	49	Right-handed alpha
Helix 2	AA2	A	64	70	Right-handed alpha
Helix 3	AA3	A	82	98	Right-handed alpha
Helix 4	AA4	A	108	137	Right-handed alpha
Helix 5	AA5	A	148	174	Right-handed alpha
Helix 6	AA6	A	179	198	Right-handed alpha
Helix 7	AA7	A	213	225	Right-handed alpha
Helix 8	AA8	A	227	238	Right-handed alpha
Helix 9	AA9	A	243	262	Right-handed alpha
Helix 10	AB1	A	290	314	Right-handed alpha
Helix 11	AB2	A	317	324	Right-handed alpha
Helix 12	AB3	A	341	347	Right-handed alpha
Helix 13	AB4	A	351	358	Right-handed alpha
Helix 14	AB5	A	358	385	Right-handed alpha
Helix 15	AB6	A	387	399	Right-handed alpha
Helix 16	AB7	A	406	440	Right-handed alpha
Helix 17	AB8	A	444	466	Right-handed alpha
Helix 18	AB9	B	53	82	Right-handed alpha
Helix 19	AC1	C	27	39	Right-handed alpha
Helix 20	AC2	C	43	80	Right-handed alpha
Helix 21	AC3	D	68	78	Right-handed alpha
Helix 22	AC4	D	221	233	Right-handed alpha
Helix 23	AC5	D	234	249	Right-handed alpha
Helix 24	AC6	D	255	268	Right-handed alpha
Helix 25	AC7	D	276	285	Right-handed alpha
Helix 26	AC8	D	298	311	Right-handed alpha
Helix 27	AC9	D	318	343	Right-handed alpha
Helix 28	AD1	D	346	362	Right-handed alpha
Helix 29	AD2	D	378	386	Right-handed alpha
Helix 30	AD3	D	391	397	Right-handed alpha
Helix 31	AD4	D	399	408	Right-handed alpha
Helix 32	AD5	D	411	423	Right-handed alpha
Helix 33	AD6	D	466	470	Right-handed 310
Helix 34	AD7	D	480	486	Right-handed alpha
Helix 35	AD8	D	487	492	Right-handed alpha
Helix 36	AD9	D	537	541	Right-handed 310
Helix 37	AE1	D	554	558	Right-handed 310
Helix 38	AE2	E	72	86	Right-handed alpha
Helix 39	AE3	E	88	124	Right-handed alpha
Helix 40	AE4	E	128	156	Right-handed alpha
Helix 41	AE5	E	162	182	Right-handed alpha
Helix 42	AE6	E	182	195	Right-handed alpha
Helix 43	AE7	E	199	203	Right-handed 310
Helix 44	AE8	F	21	41	Right-handed alpha
Helix 45	AE9	F	52	67	Right-handed alpha
Helix 46	AF1	F	68	70	Right-handed 310
Helix 47	AF2	F	75	91	Right-handed alpha
Helix 48	AF3	F	101	120	Right-handed alpha
Helix 49	AF4	F	122	135	Right-handed alpha
Helix 50	AF5	F	139	153	Right-handed alpha
Helix 51	AF6	F	156	168	Right-handed alpha
Helix 52	AF7	F	175	192	Right-handed alpha

There are 7 sheets in PDB entry 7KB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	284	first strand
Strand 2	A	264	270	anti-parallel
Strand 3	A	401	402	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	337	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	458	459	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	450	455	anti-parallel
Strand 3	D	571	574	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	513	519	anti-parallel
Strand 3	D	584	594	anti-parallel
Strand 4	D	602	604	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	513	519	anti-parallel
Strand 3	D	584	594	anti-parallel
Strand 4	D	607	610	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	13	14	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KB5