Analysis of interatomic Contacts of Structural Units in PDB entry:
7KBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KBU entry

There are 2 chains in PDB entry 7KBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 431LEU 663
B
 CYS 438SER 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7KBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
458 462Right-handed 310
Helix 2
AA2
A
466 469Right-handed 310
Helix 3
AA3
A
481 492Right-handed alpha
Helix 4
AA4
A
495 501Right-handed alpha
Helix 5
AA5
A
516 521Right-handed alpha
Helix 6
AA6
A
524 543Right-handed alpha
Helix 7
AA7
A
561 569Right-handed alpha
Helix 8
AA8
A
572 578Right-handed alpha
Helix 9
AA9
A
580 584Right-handed 310
Helix 10
AB1
A
588 600Right-handed alpha
Helix 11
AB2
A
609 625Right-handed alpha
Helix 12
AB3
A
629 634Right-handed alpha
Helix 13
AB4
A
644 651Right-handed alpha
Helix 14
AB5
A
654 658Right-handed 310
Helix 15
AB6
A
659 663Right-handed 310
Helix 16
AB7
B
458 462Right-handed 310
Helix 17
AB8
B
466 469Right-handed 310
Helix 18
AB9
B
481 492Right-handed alpha
Helix 19
AC1
B
495 501Right-handed alpha
Helix 20
AC2
B
516 521Right-handed alpha
Helix 21
AC3
B
524 542Right-handed alpha
Helix 22
AC4
B
572 584Right-handed alpha
Helix 23
AC5
B
588 600Right-handed alpha
Helix 24
AC6
B
609 625Right-handed alpha
Helix 25
AC7
B
629 634Right-handed alpha
Helix 26
AC8
B
644 651Right-handed alpha
Helix 27
AC9
B
654 658Right-handed 310
Helix 28
AD1
B
659 663Right-handed 310
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There are 5 sheets in PDB entry 7KBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 446first strand
Strand 2
A
452 456anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
471 473anti-parallel
Strand 3
A
503 506anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
642 643anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 479first strand
Strand 2
B
471 473anti-parallel
Strand 3
B
503 506anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 608first strand
Strand 2
B
642 643anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il