Analysis of interatomic Contacts of Structural Units in PDB entry:
7KCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7KCB entry

There are 4 chains in PDB entry 7KCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 347
B	SER 1	LYS 347
C	SER 1	LYS 347
D	SER 1	LYS 347

There are 48 helices in PDB entry 7KCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	52	Right-handed alpha
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	144	149	Right-handed alpha
Helix 4	AA4	A	150	152	Right-handed 310
Helix 5	AA5	A	153	165	Right-handed alpha
Helix 6	AA6	A	182	194	Right-handed alpha
Helix 7	AA7	A	205	213	Right-handed alpha
Helix 8	AA8	A	226	234	Right-handed alpha
Helix 9	AA9	A	248	256	Right-handed alpha
Helix 10	AB1	A	280	286	Right-handed alpha
Helix 11	AB2	A	297	310	Right-handed alpha
Helix 12	AB3	A	324	333	Right-handed alpha
Helix 13	AB4	B	43	52	Right-handed alpha
Helix 14	AB5	B	100	106	Right-handed alpha
Helix 15	AB6	B	144	149	Right-handed alpha
Helix 16	AB7	B	150	152	Right-handed 310
Helix 17	AB8	B	153	165	Right-handed alpha
Helix 18	AB9	B	182	194	Right-handed alpha
Helix 19	AC1	B	205	213	Right-handed alpha
Helix 20	AC2	B	226	234	Right-handed alpha
Helix 21	AC3	B	248	256	Right-handed alpha
Helix 22	AC4	B	280	286	Right-handed alpha
Helix 23	AC5	B	297	310	Right-handed alpha
Helix 24	AC6	B	324	333	Right-handed alpha
Helix 25	AC7	C	43	52	Right-handed alpha
Helix 26	AC8	C	100	106	Right-handed alpha
Helix 27	AC9	C	144	149	Right-handed alpha
Helix 28	AD1	C	150	152	Right-handed 310
Helix 29	AD2	C	153	165	Right-handed alpha
Helix 30	AD3	C	182	194	Right-handed alpha
Helix 31	AD4	C	205	213	Right-handed alpha
Helix 32	AD5	C	226	234	Right-handed alpha
Helix 33	AD6	C	248	256	Right-handed alpha
Helix 34	AD7	C	280	286	Right-handed alpha
Helix 35	AD8	C	297	310	Right-handed alpha
Helix 36	AD9	C	324	333	Right-handed alpha
Helix 37	AE1	D	43	52	Right-handed alpha
Helix 38	AE2	D	100	106	Right-handed alpha
Helix 39	AE3	D	144	149	Right-handed alpha
Helix 40	AE4	D	150	152	Right-handed 310
Helix 41	AE5	D	153	165	Right-handed alpha
Helix 42	AE6	D	182	194	Right-handed alpha
Helix 43	AE7	D	205	213	Right-handed alpha
Helix 44	AE8	D	226	234	Right-handed alpha
Helix 45	AE9	D	248	256	Right-handed alpha
Helix 46	AF1	D	280	286	Right-handed alpha
Helix 47	AF2	D	297	310	Right-handed alpha
Helix 48	AF3	D	324	333	Right-handed alpha

There are 20 sheets in PDB entry 7KCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	19	24	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	32	42	anti-parallel
Strand 3	A	68	74	anti-parallel
Strand 4	A	87	90	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	32	42	anti-parallel
Strand 3	A	340	344	anti-parallel
Strand 4	A	317	321	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	115	116	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	220	first strand
Strand 2	A	196	201	parallel
Strand 3	A	172	176	parallel
Strand 4	A	239	244	parallel
Strand 5	A	259	267	parallel
Strand 6	A	289	292	parallel
Strand 7	D	289	292	anti-parallel
Strand 8	D	259	267	parallel
Strand 9	D	239	244	parallel
Strand 10	D	172	176	parallel
Strand 11	D	196	201	parallel
Strand 12	D	217	220	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	279	first strand
Strand 2	D	275	279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	19	24	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	32	42	anti-parallel
Strand 3	B	68	74	anti-parallel
Strand 4	B	87	90	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	32	42	anti-parallel
Strand 3	B	340	344	anti-parallel
Strand 4	B	317	321	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	115	116	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	220	first strand
Strand 2	B	196	201	parallel
Strand 3	B	172	176	parallel
Strand 4	B	239	244	parallel
Strand 5	B	259	267	parallel
Strand 6	B	289	292	parallel
Strand 7	C	289	292	anti-parallel
Strand 8	C	259	267	parallel
Strand 9	C	239	244	parallel
Strand 10	C	172	176	parallel
Strand 11	C	196	201	parallel
Strand 12	C	217	220	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	C	275	279	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	19	24	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	32	42	anti-parallel
Strand 3	C	68	74	anti-parallel
Strand 4	C	87	90	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	32	42	anti-parallel
Strand 3	C	340	344	anti-parallel
Strand 4	C	317	321	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	115	116	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	19	24	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	32	42	anti-parallel
Strand 3	D	68	74	anti-parallel
Strand 4	D	87	90	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	32	42	anti-parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	317	321	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	115	116	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7KCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7KCB