Analysis of interatomic Contacts of Structural Units in PDB entry:
7KCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KCP entry

There is 1 chain in PDB entry 7KCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9VAL 616
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7KCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
24 31Right-handed alpha
Helix 3
AA3
A
39 53Right-handed alpha
Helix 4
AA4
A
53 66Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
100 107Right-handed alpha
Helix 7
AA7
A
128 145Right-handed alpha
Helix 8
AA8
A
160 174Right-handed alpha
Helix 9
AA9
A
185 197Right-handed alpha
Helix 10
AB1
A
215 225Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
294 308Right-handed alpha
Helix 13
AB4
A
325 332Right-handed alpha
Helix 14
AB5
A
333 340Right-handed alpha
Helix 15
AB6
A
356 366Right-handed alpha
Helix 16
AB7
A
373 384Right-handed alpha
Helix 17
AB8
A
385 388Right-handed 310
Helix 18
AB9
A
406 416Right-handed alpha
Helix 19
AC1
A
430 434Right-handed 310
Helix 20
AC2
A
497 506Right-handed alpha
Helix 21
AC3
A
546 555Right-handed alpha
Helix 22
AC4
A
590 605Right-handed alpha
Helix 23
AC5
A
606 610Right-handed 310
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There are 8 sheets in PDB entry 7KCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
86 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
269 270anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
342 346parallel
Strand 4
A
316 319parallel
Strand 5
A
369 372parallel
Strand 6
A
397 401parallel
Strand 7
A
423 427parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
232 236parallel
Strand 3
A
200 204parallel
Strand 4
A
152 156parallel
Strand 5
A
176 179parallel
Strand 6
A
274 280parallel
Strand 7
A
288 293anti-parallel
Strand 8
A
493 494anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
212 214anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
477 483anti-parallel
Strand 3
A
513 521anti-parallel
Strand 4
A
527 532anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 539first strand
Strand 2
A
542 545anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
578 582anti-parallel
Strand 3
A
614 615parallel
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