Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KDC entry

There are 4 chains in PDB entry 7KDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15ARG 194
B
 VAL 15ARG 194
C
 GLU 1463VAL 1565
D
 GLU 1463VAL 1565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7KDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 39Right-handed alpha
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
81 86Right-handed 310
Helix 4
AA4
A
100 110Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
130 135Right-handed 310
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
152 164Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
178 193Right-handed alpha
Helix 11
AB2
B
29 39Right-handed alpha
Helix 12
AB3
B
75 79Right-handed 310
Helix 13
AB4
B
81 86Right-handed 310
Helix 14
AB5
B
100 110Right-handed alpha
Helix 15
AB6
B
110 118Right-handed alpha
Helix 16
AB7
B
130 135Right-handed 310
Helix 17
AB8
B
136 146Right-handed alpha
Helix 18
AB9
B
152 164Right-handed alpha
Helix 19
AC1
B
172 176Right-handed 310
Helix 20
AC2
B
178 193Right-handed alpha
Helix 21
AC3
C
1490 1503Right-handed alpha
Helix 22
AC4
C
1513 1515Right-handed 310
Helix 23
AC5
D
1490 1504Right-handed alpha
Helix 24
AC6
D
1513 1515Right-handed 310
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There are 4 sheets in PDB entry 7KDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 60first strand
Strand 2
A
63 71anti-parallel
Strand 3
A
16 24parallel
Strand 4
A
91 97parallel
Strand 5
A
124 129parallel
Strand 6
A
167 170parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 60first strand
Strand 2
B
63 72anti-parallel
Strand 3
B
17 24parallel
Strand 4
B
91 97parallel
Strand 5
B
124 129parallel
Strand 6
B
167 170parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1481 1486first strand
Strand 2
C
1466 1473anti-parallel
Strand 3
D
1559 1564parallel
Strand 4
D
1517 1521anti-parallel
Strand 5
D
1528 1530anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1528 1529first strand
Strand 2
C
1517 1521anti-parallel
Strand 3
C
1559 1564anti-parallel
Strand 4
D
1466 1473parallel
Strand 5
D
1481 1486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il