Analysis of interatomic Contacts of Structural Units in PDB entry:
7KDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7KDF entry

There are 5 chains in PDB entry 7KDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 113GLU 684
B
 ALA -15GLN 450
C
 ASP 5GLY 212
D
 ALA 2SER 220
E
 ARG 861THR 888
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7KDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 139Right-handed alpha
Helix 2
AA2
A
140 145Right-handed alpha
Helix 3
AA3
A
150 156Right-handed alpha
Helix 4
AA4
A
158 174Right-handed alpha
Helix 5
AA5
A
182 185Right-handed 310
Helix 6
AA6
A
186 195Right-handed alpha
Helix 7
AA7
A
203 208Right-handed 310
Helix 8
AA8
A
214 247Right-handed alpha
Helix 9
AA9
A
248 255Right-handed alpha
Helix 10
AB1
A
266 292Right-handed alpha
Helix 11
AB2
A
297 680Right-handed alpha
Helix 12
AB3
B
11 22Right-handed alpha
Helix 13
AB4
B
28 34Right-handed alpha
Helix 14
AB5
B
38 53Right-handed alpha
Helix 15
AB6
B
55 65Right-handed alpha
Helix 16
AB7
B
77 99Right-handed alpha
Helix 17
AB8
B
106 112Right-handed alpha
Helix 18
AB9
B
114 136Right-handed alpha
Helix 19
AC1
B
139 448Right-handed alpha
Helix 20
AC2
C
10 21Right-handed alpha
Helix 21
AC3
C
23 168Right-handed alpha
Helix 22
AC4
C
202 210Right-handed alpha
Helix 23
AC5
D
3 5Right-handed 310
Helix 24
AC6
D
6 25Right-handed alpha
Helix 25
AC7
D
138 146Right-handed alpha
Helix 26
AC8
D
189 200Right-handed alpha
Helix 27
AC9
D
205 220Right-handed alpha
Helix 28
AD1
E
864 882Right-handed alpha
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There are 2 sheets in PDB entry 7KDF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
178 180anti-parallel
Strand 3
C
192 193anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 151first strand
Strand 2
D
159 163anti-parallel
Strand 3
D
169 173anti-parallel
Strand 4
D
181 184anti-parallel
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